CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig239 contig Ccv1_Contig239:15..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICFE (50S ribosomal protein L14 OS=Rickettsia felis GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.583e-12
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVKEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKEAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICCK (50S ribosomal protein L14 OS=Rickettsia canadensis (strain McKiel) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVKEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVISVKEAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICBR (50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV S+KEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICB8 (50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV S+KEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_HELHP (50S ribosomal protein L14 OS=Helicobacter hepaticus GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ AR+GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLSVADNSGAKEIMCIKILGGSHRRYARVGDVIVASVKKAIPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICRS (50S ribosomal protein L14 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVK+A+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKDAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICRO (50S ribosomal protein L14 OS=Rickettsia rickettsii (strain Iowa) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVK+A+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKDAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICPU (50S ribosomal protein L14 OS=Rickettsia peacockii (strain Rustic) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVK+A+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKDAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICCN (50S ribosomal protein L14 OS=Rickettsia conorii GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVK+A+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKDAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICAH (50S ribosomal protein L14 OS=Rickettsia akari (strain Hartford) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGA+ VMCI+ L G    VA+LGD IV SVKEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGARKVMCIKVLGGSHHMVAKLGDVIVVSVKEAIPGGKVKKGDV 57          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_RICFE4.583e-1266.0750S ribosomal protein L14 OS=Rickettsia felis GN=r... [more]
RL14_RICCK5.985e-1266.0750S ribosomal protein L14 OS=Rickettsia canadensis... [more]
RL14_RICBR5.985e-1264.2950S ribosomal protein L14 OS=Rickettsia bellii (st... [more]
RL14_RICB85.985e-1264.2950S ribosomal protein L14 OS=Rickettsia bellii (st... [more]
RL14_HELHP5.985e-1266.6750S ribosomal protein L14 OS=Helicobacter hepaticu... [more]
RL14_RICRS1.021e-1164.2950S ribosomal protein L14 OS=Rickettsia rickettsii... [more]
RL14_RICRO1.021e-1164.2950S ribosomal protein L14 OS=Rickettsia rickettsii... [more]
RL14_RICPU1.021e-1164.2950S ribosomal protein L14 OS=Rickettsia peacockii ... [more]
RL14_RICCN1.021e-1164.2950S ribosomal protein L14 OS=Rickettsia conorii GN... [more]
RL14_RICAH1.021e-1164.2950S ribosomal protein L14 OS=Rickettsia akari (str... [more]

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Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
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