CX289309

Overview
NameCX289309
Unique NameCX289309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.036e-71
Identity = 128/182 (70.33%), Postives = 145/182 (79.67%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNXXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGC 550
            NARI KTV+A NAKVGY+GPA D NYD++HLGT P+TL+EIAEGRHPF SA+ NAKNPVIIVGAG+F+R DKDA+F+ V+ IAK  NV+RPDWN                    PES   IESAKFVYLMGADDV+L+KLP+DAFVVYQGHHGD GVYRANVILPASAF+EKEG YENTEGC
Sbjct:  449 NARIHKTVKATNAKVGYVGPAADFNYDHEHLGTDPQTLVEIAEGRHPFSSALKNAKNPVIIVGAGVFDRDDKDAVFAAVDTIAKNNNVVRPDWNGLNVLLLNAAQVAALDLGLVPESDKCIESAKFVYLMGADDVNLDKLPDDAFVVYQGHHGDRGVYRANVILPASAFTEKEGIYENTEGC 630          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 5.737e-66
Identity = 122/183 (66.67%), Postives = 142/183 (77.60%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNXXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCT 553
            NARI KTVRA+NAKVGY+GP  + NYD +HLGTGP TL EIAEGRHPF +A+ NAKNP IIVGAGLF R DK+AI S+VE+IA+  NV+RPDWN                     +S+ ++ESAKFVYLMGADDV+++K+P DAFVVYQGHHGD  VYRANVILPASAF+EKEGTYENTEG T
Sbjct:  455 NARICKTVRASNAKVGYVGPPAEFNYDCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIAQANNVVRPDWNGLNFLLQYAAQAAALDLGLIQQSAKALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANVILPASAFTEKEGTYENTEGFT 637          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.928e-29
Identity = 74/187 (39.57%), Postives = 98/187 (52.41%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKK---GNVIRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NARIRK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++I+G+   +R D  AI + V  IA+K    + +  DW                     P   +      K ++L+GAD   +  + LP D F+VYQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLQEAKKPMVILGSSALQRNDGAAILAAVSNIAQKIRTSSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIQKNPPKMLFLLGADGGCITRQDLPKDCFIVYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 2.518e-29
Identity = 72/187 (38.50%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV---IRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NARIRK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++++G+   +R D  AI + V +IA+K  +   +  DW                     P   +      K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_GORGO (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.518e-29
Identity = 72/187 (38.50%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV---IRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NARIRK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++++G+   +R D  AI + V +IA+K  +   +  DW                     P   +      K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_RECAM (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.288e-29
Identity = 70/187 (37.43%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN------XXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            N RIRK     N  V  +GP  +L Y+ ++LG    TLLEI+EGRHPF   +  +K P+II+G  + +R D  +I   V+ + K   +   +WN                           + SNS     F+YL+GAD++ +E    + F+VYQGHHGD+G   A+VILP SA++EK  TY N EG
Sbjct:  396 NTRIRKRYLQGNYSVYSVGPTNNLTYNTENLGNDISTLLEISEGRHPFCKKLMKSKKPLIIIGTHVLQRTDGTSIIELVKTLFKYTQIKTSNWNGFNILHTSASSVGALDLGIGSTKRYSEKISNSKIEKHFIYLLGADEIRIEN-SKEHFIVYQGHHGDYGANIADVILPGSAYTEKTATYVNVEG 581          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.288e-29
Identity = 72/187 (38.50%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV---IRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NARIRK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++++G+   +R D  AI + V +IA+K  +   +  DW                     P   +      K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.294e-29
Identity = 71/187 (37.97%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV---IRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NARIRK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++++G+   +R D  AI + V +IA+K  +   +  DW                     P   +      + ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPRLLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.294e-29
Identity = 71/187 (37.97%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV---IRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NAR+RK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++++G+   +R D  AI + V +IA+K  +   +  DW                     P   +      K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARLRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
BLAST of CX289309 vs. ExPASy Swiss-Prot
Match: NDUS1_PONAB (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.632e-28
Identity = 70/187 (37.43%), Postives = 98/187 (52.41%), Query Frame = 2
Query:    5 NARIRKTVRANNAKVGYIGPATDLNYDNQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV---IRPDWNXXXXXXXXXXXXXXXXXXXXP-ESSNSIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG 547
            NARIRK+   N+ KV  IG   DL Y   HLG  PK L +IA G HPF   +  AK P++++G+   +R D  AI +   +IA+K  +   +  DW                     P   +      + ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG
Sbjct:  415 NARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAFSSIAQKIRMTSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPRLLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEG 601          
The following BLAST results are available for this feature:
BLAST of CX289309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
NDUS1_SOLTU2.036e-7170.33NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_ARATH5.737e-6666.67NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_BOVIN1.928e-2939.57NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_HUMAN2.518e-2938.50NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_GORGO2.518e-2938.50NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RECAM3.288e-2937.43NADH-ubiquinone oxidoreductase 75 kDa subunit OS=R... [more]
NDUS1_MACFA3.288e-2938.50NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONPY4.294e-2937.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PANTR4.294e-2937.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONAB1.632e-2837.43NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionC02011E09SK IF1 Citrus clementina cDNA clone C02011E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289309 ID=CX289309; Name=CX289309; organism=Citrus clementina; type=EST; length=555bp
AGGAAATGCCAGAATCCGCAAGACCGTCCGAGCAAACAATGCTAAGGTGG
GTTACATTGGTCCTGCAACAGATTTGAACTATGATAACCAGCATCTTGGC
ACTGGCCCGAAAACACTTCTTGAAATTGCTGAGGGTCGCCACCCGTTTTT
CTCTGCAATCTCAAATGCCAAAAACCCGGTCATTATTGTTGGTGCTGGAC
TCTTTGAGAGGAAGGATAAGGATGCTATTTTCTCTACTGTTGAAGCCATT
GCAAAAAAAGGGAATGTTATCAGACCTGATTGGAATGGGCTCAATGTTTT
GCTTCTCAATGCTGCTCAAGCTGCAGCCCTGGACCTCGGACTTGTGCCTG
AGTCCAGCAACAGCATTGAGTCTGCAAAGTTTGTCTATCTCATGGGTGCC
GATGATGTGGACTTGGAAAAGCTTCCAAATGATGCCTTTGTTGTTTATCA
GGGCCATCATGGTGACCATGGTGTCTATCGCGCCAATGTAATTCTCCCAG
CATCAGCTTTTAGCGAGAAGGAAGGGACTTACGAAAATACTGAAGGTTGC
ACTCA
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