CX289312

Overview
NameCX289312
Unique NameCX289312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289312_ssr46 microsatellite CX289312_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15376 contig Ccv1_Contig15376:40..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289312 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.511e-38
Identity = 85/158 (53.80%), Postives = 106/158 (67.09%), Query Frame = 1
Query:   67 MKNFRVXXXXXXXXXXXXXQVAKCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFD 519
            M N RV             QVA+CQSD+E   +  +     +VGE+  D         D  LS  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FD
Sbjct:    1 MMNLRVLFLALLLLASPLLQVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFD 154          
The following BLAST results are available for this feature:
BLAST of CX289312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SSRA_ARATH1.511e-3853.80Translocon-associated protein subunit alpha OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02011E12SK IF1 Citrus clementina cDNA clone C02011E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289312 ID=CX289312; Name=CX289312; organism=Citrus clementina; type=EST; length=520bp
GATCACCTTCATTCAATTCCAAAGCGGCGTCGTGTCAATTCAAACAACAA
ACAAACAACCATGGAGATGAAGAATTTTAGGGTTTTCTTCTTCGCTCTCC
TCCTTCTAGCCTCTCCTCTTCTTCAAGTTGCTAAGTGTCAATCGGATTCG
GAAACGGGAGTTGCAGAGACCGAAGGGGGTGATCTTGGGATTGTTGGTGA
GGATGCTCAAGATTTTGGTGATGGGACTTTAAGCCCTGCTCCAGGAGTGG
ATACTGTCTGTATCTTCCCTAAAAATAGCGCCCGAGTGGTGGCTGCTGGA
GAAGAAACTGAACTACTGGTTGGGATGAAAAATGATGGGGAGTCAAGCGT
GAATGTGATTGCAATTCAGGCCAGTGTTCATCTCCCTTTTGATCACAGTC
TTCTGGTTCAAAATCTCACTGGACAGGCCTTTAACAATGCAACTGTGCCG
GTATCAGCTCAGGCTACTTTCCCATACATTTTTGCTGTCAGCAAGTTCTT
GCAGCCTGGAACTTTTGATC
back to top