CX289313

Overview
NameCX289313
Unique NameCX289313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:15..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289313 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.635e-15
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  110 SEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPRAETLLNWFKIEKAG 490
            + PVLD  G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G P   TL +WFKIEKAG
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160          
BLAST of CX289313 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   86 PLLGISSNS-EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLGT--NGQ--CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPC--NEEPLWKVDSYDDP----LIVTGGSEGHPRAETLLNWFKIEK 484
            PLL  + ++  PVLDI G K+++   Y ++PVL   GG  T   T  NG   CP  V+Q     +    L   P +N K  +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG +G+P  ET+ +WFKIE+
Sbjct:   24 PLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE 165          
The following BLAST results are available for this feature:
BLAST of CX289313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC1.635e-1535.8221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.611e-1335.62Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC02011F01SK IF1 Citrus clementina cDNA clone C02011F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289313 ID=CX289313; Name=CX289313; organism=Citrus clementina; type=EST; length=501bp
GCACGAGGGCCTTCCAGTGGCAAAAAAAATGAAGACTTCATTGATAACAA
CACTCTCCTTCCTTATCCTTACCTTGGCCACGCAGCCTCTATTGGGCATC
TCATCAAACTCTGAACCTGTCTTAGATATCATTGGCAACAAGGTCAAATC
CACCCTCGAGTATAAACTTATCCCAGTCCTAGATGGCGCCGGTGGATTCA
GCACACACCTAGGCACAAATGGACAGTGTCCCTTGGACGTTATCCAATTA
AGTTCTCCTAGCGAAAGGGGAGATAATTTAAGATTACTTCCGTACGACAA
TTACAAAATTGTCAAGGTATCCACTGATGTCAACCTGAGATTCCCCGTAA
AAGTTTCTGTTAAGCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGC
TATGACGATCCATTAATTGTAACCGGCGGAAGTGAGGGCCACCCACGAGC
TGAAACGTTGCTAAATTGGTTTAAGATTGAGAAAGCTGGAAATTTTTCAT
A
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