CX289314

Overview
NameCX289314
Unique NameCX289314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10247 contig Ccv1_Contig10247:300..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.070e-57
Identity = 102/128 (79.69%), Postives = 115/128 (89.84%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 384
            VDCDEHKS+CSKYGV GYPTIQWFPKGSLEPKK+EGPR+AE+LAE+VN EGGTNVKIA  PS+VV LT + F+E+VLD +KDVLVEFYAPW GHCK+LAP YEKVAA F  EDDVV+ANLDADKY+DL
Sbjct:   86 VDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFVNTEGGTNVKIATAPSHVVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDL 213          

HSP 2 Score: 67.0106 bits (162), Expect = 3.374e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  169 IAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 384
            ++    +VV LT +NF++ V    K  LVEFYAPW GHCK LAP YEK+  +F     V++A +D D++K +
Sbjct:   24 VSVSADDVVVLTEENFEKEV-GHDKGALVEFYAPWCGHCKKLAPEYEKLPNSFKKAKSVLIAKVDCDEHKSV 94          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.385e-57
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 384
            VDCDE KS+C+KYGV GYPTIQWFPKGSLEP+KYEGPR+AEALAEYVN EGGTNVK+AAVP NVV LT DNFDEIVLD++KDVLVEFYAPW GHCK+LAPTYEKVA  F  E+ VV+ANLDAD +K L
Sbjct:   80 VDCDEQKSVCTKYGVSGYPTIQWFPKGSLEPQKYEGPRNAEALAEYVNKEGGTNVKLAAVPQNVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEEGVVIANLDADAHKAL 207          

HSP 2 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  169 IAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 384
            ++AV  +VV LT D+F++ V  K K  LVEFYAPW GHCK LAP YEK+ A+F     V++A +D D+ K +
Sbjct:   18 VSAVADDVVVLTDDSFEKEV-GKDKGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEQKSV 88          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.319e-34
Identity = 70/125 (56.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 VDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 369
            VDCD+  +K+LCSKY V GYPT++ F K S   K Y G RS + L  Y+NN   TNVK+   PSNVV L+  NFD +VLDKSK+VLVEFYAPW GHCK L P YE +   +  E DVV+A +D D
Sbjct:   80 VDCDQADNKALCSKYDVSGYPTLKIFDK-STTAKDYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDCD 203          

HSP 2 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  163 VKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADK 372
            V + +   NVV L+ DNFD +V D SK V V+FYAPW GHCK LAP +E +A  F  + + VV+A +D D+
Sbjct:   15 VALCSAEGNVVVLSPDNFDTVV-DGSKTVFVKFYAPWCGHCKKLAPDFEILADTFAPVSNKVVIAKVDCDQ 84          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.326e-28
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 384
            +D D H  +  KY + G+PT+ WFP    EP +Y   R  ++L ++V+ + G   +   +PSNVV L + NFD++V+D  KDVLVEFYA W G+CK LAPTYE +   F  E +V +  ++AD + D+
Sbjct:   79 IDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIKKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADI 206          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: TIGA_ASPNG (Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.475e-24
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 369
            VD DEH+ L  K+GVQG+PT++WF   S EP+ Y+G R  E+L+ +++ + G   +      + V +  D   +  +    DVLV F APW GHCKNLAPT+E +A  F LE +VV+A +DAD
Sbjct:   78 VDADEHRDLGRKFGVQGFPTLKWFDGKSDEPEDYKGGRDLESLSSFISEKTGVKPRGPKKEPSKVEMLNDATFKGAVGGDNDVLVAFTAPWCGHCKNLAPTWEALANDFVLEPNVVIAKVDAD 200          

HSP 2 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  172 AAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADKYKDL 384
            +AV + VV L   NFD++VL   K  LVEF+APW GHCKNLAP YE++  AF    D V V  +DAD+++DL
Sbjct:   15 SAVTAAVVDLVPKNFDDVVLKSGKPALVEFFAPWCGHCKNLAPVYEELGQAFAHASDKVTVGKVDADEHRDL 86          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.754e-21
Identity = 46/123 (37.40%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 369
            VD D  ++L  ++GVQG+PT+++F   S +P  Y+G R  ++L+ ++  + G   +      ++V +  D   +  +   K+VLV F APW GHCKNLAPT+EK+AA F  + ++ +A +DAD
Sbjct:   79 VDADAERALGKRFGVQGFPTLKFFDGKSEQPVDYKGGRDLDSLSNFIAEKTGVKARKKGSAPSLVNILNDATIKGAIGGDKNVLVAFTAPWCGHCKNLAPTWEKLAATFASDPEITIAKVDAD 201          

HSP 2 Score: 72.7886 bits (177), Expect = 6.149e-13
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  175 AVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADKYKDL 384
            A  S V+ L   NFD++VL   K  LVEF+APW GHCKNLAP YE++A A    +D V +A +DAD  + L
Sbjct:   17 AAKSAVLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERAL 87          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDI1_SCHPO (Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces pombe GN=SPAC1F5.02 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 1
Query:  115 SAEALAEYVNN--EGGTNVKIAAVP-----SNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            +A+A+ ++V +  +G    KI + P      ++V L ADNFD+IV+D++KDVLVEFYAPW GHCKNLAPTYEK+A  ++ + +VVVA +DA
Sbjct:  325 TAKAMTKFVGDFVDGKLQPKIKSQPIPESQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDA 415          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA4_CAEEL (Probable protein disulfide-isomerase A4 OS=Caenorhabditis elegans GN=C14B9.2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDL 384
            VD      L  ++ +QGYPT++++  G   P  Y+G R    + E+V +    N K    P  VV LT +NFD+ +   ++ VLVEFYAPW GHCK LAP YEK A     +   V +  +DA   KDL
Sbjct:   89 VDATVETELGKRFEIQGYPTLKFWKDGK-GPNDYDGGRDEAGIVEWVESRVDPNYK--PPPEEVVTLTTENFDDFI-SNNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDL 213          

HSP 2 Score: 67.3958 bits (163), Expect = 2.583e-11
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   13 EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP--RSAEALAEYVNN-EGGTNVKIAAVPSNVVG----LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAF-TLEDDVVVANLDA 366
            EH  +   Y  + YP         + P +++G    + EA  + +++ +   +VK A  P +  G    +   NFD+IV D+SKDVL+EFYAPW GHCK+    Y ++A A    + +VV+A +DA
Sbjct:  444 EHNVVVFGYDGKKYP---------MNPDEFDGELDENLEAFMKQISSGKAKAHVKSAPAPKDDKGPVKTVVGSNFDKIVNDESKDVLIEFYAPWCGHCKSFESKYVELAQALKKTQPNVVLAKMDA 560          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: TXND5_MOUSE (Thioredoxin domain-containing protein 5 OS=Mus musculus GN=Txndc5 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNN------------EGGTNVKIAAVPSN----VVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVA-AAFTLEDDVVVANLD 363
            VDC +H ++CS++ V+GYPT+ WF  G  +  +Y+G R  E+L +YV +            E      +AA P+     V+ LT  +F++ +        V+FYAPW GHCKNLAPT+E+++   F    DV +A +D
Sbjct:  231 VDCTQHYAVCSEHQVRGYPTLLWFRDGK-KVDQYKGKRDLESLRDYVQSQLQGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEKSFEDTIAQGI--TFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVD 365          

HSP 2 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV----NNEGGTNVKIAAVP------SNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 375
            VDC     +CS  GV+GYPT+++F  G  E  KY+GPR  E L  ++    N E  T    A  P        +  L+A+NF+  V   +    ++F+APW GHCK LAPT+E++A      + V +  +D  ++
Sbjct:  105 VDCTADSDVCSAQGVRGYPTLKFFKPGQ-EAVKYQGPRDFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNH--FIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQH 236          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: TXND5_HUMAN (Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNE------GGTNVK-------IAAVPS----NVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVA 318
            VDC +H  LCS   V+GYPT+ WF  G  +  +Y+G R  E+L EYV ++      G T          +AA P      V+ LT +NFD+ + +      ++FYAPW GHCK LAPT+E+++
Sbjct:  245 VDCTQHYELCSGNQVRGYPTLLWFRDGK-KVDQYKGKRDLESLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELS 364          

HSP 2 Score: 82.8037 bits (203), Expect = 5.942e-16
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV----NNEGGTNVKIAAVPS------NVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 384
            VDC  H  +CS  GV+GYPT++ F  G  E  KY+GPR  + L  ++    N E  T       PS       +  L+A NF+  V     D  ++F+APW GHCK LAPT+E++A      + V +  +D  ++ +L
Sbjct:  119 VDCTAHSDVCSAQGVRGYPTLKLFKPGQ-EAVKYQGPRDFQTLENWMLQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQG--DHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYEL 253          
The following BLAST results are available for this feature:
BLAST of CX289314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PDIA6_MEDSA1.070e-5779.69Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH2.385e-5780.47Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDI1_DICDI6.319e-3456.00Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
PDI2_SCHPO2.326e-2842.19Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
TIGA_ASPNG3.475e-2443.90Protein disulfide-isomerase tigA OS=Aspergillus ni... [more]
ERP38_NEUCR2.754e-2137.40Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
PDI1_SCHPO4.397e-1951.65Putative protein disulfide-isomerase C1F5.02 OS=Sc... [more]
PDIA4_CAEEL1.414e-1739.53Probable protein disulfide-isomerase A4 OS=Caenorh... [more]
TXND5_MOUSE1.197e-1636.23Thioredoxin domain-containing protein 5 OS=Mus mus... [more]
TXND5_HUMAN1.564e-1639.02Thioredoxin domain-containing protein 5 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC02011F02SK IF1 Citrus clementina cDNA clone C02011F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289314 ID=CX289314; Name=CX289314; organism=Citrus clementina; type=EST; length=386bp
GTGGACTGTGACGAGCATAAGAGCTTATGCAGCAAATATGGTGTTCAAGG
ATACCCAACAATTCAATGGTTTCCTAAAGGTTCTTTGGAACCCAAAAAGT
ATGAAGGGCCACGATCTGCTGAAGCCCTTGCTGAGTATGTGAATAATGAA
GGAGGAACCAATGTGAAGATAGCTGCAGTCCCATCCAATGTGGTGGGACT
AACAGCTGATAATTTTGATGAGATAGTTTTGGACAAAAGCAAAGATGTTT
TGGTTGAATTTTATGCACCATGGTGGGGCCATTGCAAAAACCTTGCGCCT
ACATATGAAAAGGTGGCAGCCGCATTTACATTGGAAGATGATGTAGTTGT
TGCTAATTTGGATGCTGACAAATACAAGGATCTGGC
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