CX289343

Overview
NameCX289343
Unique NameCX289343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289343_ssr240 microsatellite CX289343_ssr240:240..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX289343 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.082e-53
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 DKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLR 216
            DKVK EIQ+FFNL MEEKKK+WQ P E+EGFGQAFVVSE+Q+LDW DLFF T  PV LRKPHLFPKLP   R
Sbjct:   97 DKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFR 168          

HSP 2 Score: 108.997 bits (271), Expect = 4.082e-53
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 3
Query:  339 LPFLCRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFEN--GLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINE 587
            LP   RDTLE+YS+EV ++A  LI++MA+ L IK EE+ + F++   +QSMRMNYYPPCPQP +V+GLTPHSDSV LT+L+Q+N+
Sbjct:  163 LPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVND 247          
BLAST of CX289343 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 DKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLR 216
            +K+K + ++FF L  +EK  Y Q P  +EG+GQAFV SEEQ+LDW D+ F+ T PV  R    +P  P S R
Sbjct:   95 EKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFR 166          
The following BLAST results are available for this feature:
BLAST of CX289343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRG1_ARATH4.082e-5376.39Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA2.215e-1347.22S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
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Properties
Property NameValue
Genbank descriptionC02011H09SK IF1 Citrus clementina cDNA clone C02011H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289343 ID=CX289343; Name=CX289343; organism=Citrus clementina; type=EST; length=589bp
GACAAAGTGAAGAAAGAGATACAGGAATTCTTCAATCTCAGCATGGAAGA
GAAGAAAAAATATTGGCAGTATCCCGGAGAAGTAGAAGGATTTGGACAAG
CCTTTGTTGTATCTGAGGAACAAAGGCTTGACTGGGGAGACCTGTTCTTC
ATGACCACTCTTCCTGTCCATCTGAGGAAACCCCACTTGTTTCCTAAGCT
CCCTCCTTCTCTCAGGTTCTCTTTCTCTCTCTAATTCGAGTGTGTGTGTT
CTGTTCTGTTAAGTGATTGTGTAATCCAGTGCAGGCTCCGCATTGATTTT
AGTATCCAGCTGCTACTGGCCTACTGGTATGTTCACACCTTCCTTTTCTA
TGTAGGGATACGTTGGAAGTTTACTCAACGGAAGTAAATGCTCTAGCGAT
GAATTTAATATCGAGAATGGCAAAAGTCTTACATATCAAGGATGAGGAAG
TGAGAGAATTCTTCGAAAATGGATTGCAATCAATGAGGATGAACTATTAT
CCTCCATGTCCTCAACCGGGGAAAGTTATGGGCCTTACACCCCATTCTGA
TAGCGTTGCACTTACCATTCTCCTACAAATCAATGAAGC
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