CX289347

Overview
NameCX289347
Unique NameCX289347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 2.778e-66
Identity = 120/131 (91.60%), Postives = 127/131 (96.95%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKNL+GLVEWYGKN +LREL NLVVVGGDRRKESKD EE+AEMKKMY LI++YKLNGQFRWISSQM+RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV+G
Sbjct:  576 FTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHG 706
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 6.188e-66
Identity = 120/131 (91.60%), Postives = 126/131 (96.18%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKN+TGLVEWYGKNAKLRELVNLVVV GDRRKESKDLEE+AEMKKMY LI+ YKLNGQFRWISSQMNRVRNGELYR ICDT+GAFVQPA+YEAFGLTVVEAMTCGLPTFATC GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.056e-65
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKN+TGLVEWYGKNAKLRELVNLVVV GDRRKESKDLEE+AEMKKMYSLI+ YKLNGQFRWISSQMNRVRNGELYR I DTKGAFVQPA+YEAFGLTVVEAMTCGLPTFATC GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYSLIETYKLNGQFRWISSQMNRVRNGELYRVIADTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.201e-63
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKN+TGLVEWYGKNAKLRELVNLVVV GDRRKESKDLEE+AEMKKMY LI+ YKLNGQFRWISSQMNRVRNGELYR ICDTKGAFVQPA+YEAFGLTVVEAM  GLPTFAT  GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYELIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.201e-63
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLD VKNLTG VEWY K+ KLRELVNLVVVGGDRRKESKDLEEQA+MKKMY LID YKLNGQFRWISSQMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G
Sbjct:  576 FTMARLDNVKNLTGFVEWYAKSPKLRELVNLVVVGGDRRKESKDLEEQAQMKKMYELIDTYKLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATLHGGPAEIIVHG 706
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.404e-63
Identity = 118/131 (90.08%), Postives = 122/131 (93.13%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKN+TGLVEWYGKNAKLRELVNLVVV GDRRKESKDLEE AEMKKMY LI+ YKLNGQFRWISSQMNRVRNGELYR ICDTKGAFVQPA+YEAFGLTVVEAM  GLPTFAT  GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.433e-62
Identity = 117/131 (89.31%), Postives = 121/131 (92.37%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKNLTGLVEWY KN +LR LVNLVVVGGDRRKESKDLEEQAEMKKMY LI+ + LNGQFRWISSQMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNLTGLVEWYAKNPRLRGLVNLVVVGGDRRKESKDLEEQAEMKKMYELIETHNLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.433e-62
Identity = 117/131 (89.31%), Postives = 121/131 (92.37%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKNLTGLVEWY KN +LR LVNLVVVGGDRRKESKDLEEQAEMKKMY LI+ + LNGQFRWISSQMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNLTGLVEWYAKNPRLRGLVNLVVVGGDRRKESKDLEEQAEMKKMYELIETHNLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.178e-62
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKNLTGLVEWY KN +LRELVNLVVVGGDRRKESKDLEEQAEMKKMY LI  + LNGQFRWISSQMNRVRNGELYRYI DT+GAFVQPA YEAFGLTVVEAM+CGLPTFAT +GGPAEIIV+G
Sbjct:  574 FTMARLDRVKNLTGLVEWYAKNPRLRELVNLVVVGGDRRKESKDLEEQAEMKKMYELIKTHNLNGQFRWISSQMNRVRNGELYRYIADTRGAFVQPAFYEAFGLTVVEAMSCGLPTFATNQGGPAEIIVHG 704
[Close]
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.421e-62
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 2 
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLD VKNLTG+VEWY KN KLRELVNLVVVGGDRRKESKDLEEQA+MKKMY LID YKLNGQFRWIS+Q NRVRNGELYR I DTKGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G
Sbjct:  570 FTMARLDNVKNLTGIVEWYAKNPKLRELVNLVVVGGDRRKESKDLEEQAQMKKMYGLIDTYKLNGQFRWISAQKNRVRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMTCGLPTFATIHGGPAEIIVHG 700
The following BLAST results are available for this feature:
BLAST of CX289347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SUS1_ARATH2.778e-6691.60Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUSY_SOYBN6.188e-6691.60Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_PHAAU1.056e-6592.37Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUSY_VICFA2.201e-6390.08Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUS1_DAUCA2.201e-6390.08Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUSY_MEDSA6.404e-6390.08Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUSY_SOLLC2.433e-6289.31Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS1_SOLTU2.433e-6289.31Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUS2_SOLTU3.178e-6288.55Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]
SUS2_DAUCA5.421e-6287.79Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC02012A02SK IF1 Citrus clementina cDNA clone C02012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289347 ID=CX289347; Name=CX289347; organism=Citrus clementina; type=EST; length=395bp
GTTTACAATGGCAAGATTGGACCGTGTAAAGAATTTGACTGGGCTTGTGG
AGTGGTATGGAAAGAATGCTAAGCTACGTGAGTTGGTGAACTTAGTCGTA
GTGGGTGGTGATAGGAGAAAGGAGTCCAAGGACTTGGAAGAACAGGCTGA
AATGAAGAAGATGTATTCCCTCATTGATCAATACAAATTGAATGGCCAGT
TCCGATGGATCTCTTCTCAGATGAATCGGGTCAGGAACGGTGAATTGTAC
CGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAACCTGCACTGTATGA
GGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGTGGATTGCCAACAT
TTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGTTAACGGGA
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