CX289348

Overview
NameCX289348
Unique NameCX289348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length357
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5256 contig Ccv1_Contig5256:295..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX289348 vs. ExPASy Swiss-Prot
Match: XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.499e-16
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 2 
Query:    2 DCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLL--GKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 229
            DC SYV  GSN   P+  CCPELAG+V+S+P C+C L   G +  +G+K+D  RA +L ++CGV  P  +LCS+ G P
Sbjct:   49 DCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126
[Close]
BLAST of CX289348 vs. ExPASy Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 2 
Query:    2 DCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLA 220
            DCLS+VT GS V  P+  CC  L  +V + P CLC+    + + G+ +D+++A  LPSVC V  PP   C L+
Sbjct:   36 DCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLDLSKAASLPSVCKVAAPPSARCGLS 108
The following BLAST results are available for this feature:
BLAST of CX289348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XYP11_ARATH3.499e-1648.72Xylogen-like protein 11 OS=Arabidopsis thaliana GN... [more]
NLTL2_ARATH8.067e-1342.47Non-specific lipid-transfer protein-like protein A... [more]
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Properties
Property NameValue
Genbank descriptionC02012A03SK IF1 Citrus clementina cDNA clone C02012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289348 ID=CX289348; Name=CX289348; organism=Citrus clementina; type=EST; length=357bp
GGACTGCTTGTCGTACGTGACGGAGGGAAGCAATGTGACGGTGCCGGACA
AGCCGTGCTGCCCGGAGCTGGCCGGTTTGGTTGAGAGCAACCCCATTTGT
TTGTGCCAGCTTCTCGGGAAGAACAATACGTATGGAATCAAGATTGATAT
CACTCGAGCTCTCAAGCTTCCTTCTGTTTGTGGCGTCACCACCCCTCCGG
TTAATCTTTGCTCCTTGGCTGGAGTTCCGATTGAAGCTCCAACAGGAAGC
CCAGGGCCCGCGTCACCAGGTACTCAACCGCCGTCCGGTTTAGCTGCCAG
CCCTTCAAATGGAAATAATGACAATGCAGCATCAGGCAACGCAGGCTCCG
TTCTGGC
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