CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289349_ssr157 microsatellite CX289349_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +DQKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 MDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +DQKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 MDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDTKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.865e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  393 LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 434          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.865e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID+KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.865e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA_TRYCR1.093e-1797.62Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA_TRYBR1.093e-1797.62Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA_EUGGR1.093e-1797.62Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA1_ARATH1.093e-1797.62Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_PLAYO1.428e-1795.24Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK1.428e-1795.24Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_DAUCA1.428e-1797.62Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA2_EMENI1.865e-1795.24Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA2_ELEIN1.865e-1795.24Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA1_PNECA1.865e-1795.24Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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