CX289350

Overview
NameCX289350
Unique NameCX289350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.953e-55
Identity = 102/129 (79.07%), Postives = 114/129 (88.37%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKV 388
            PTPSLSAM+IN+YKLRSNIKSFNLSGMGCSAGLIS+DLARDLLQVHPNSNA++VSTEIITPNYYQGNERAMLLPNCLFRMG AAI           AKY+L H+VRTH+GADDK++ CV+E+EDKEG V
Sbjct:  197 PTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISVDLARDLLQVHPNSNAIIVSTEIITPNYYQGNERAMLLPNCLFRMGAAAIHMSNRRSDRWRAKYKLSHLVRTHRGADDKSFYCVYEQEDKEGHV 325          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.152e-54
Identity = 98/129 (75.97%), Postives = 112/129 (86.82%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKV 388
            PTPSLSAM+IN+YKLRSNIKS+NLSGMGCSA LIS+D+ARDLLQVHPNSNA+++STEIITPNYY+GNERAMLLPNCLFRMGGAAI           AKY+L H+VRTH+GADDK+Y CV E+EDK G V
Sbjct:  192 PTPSLSAMIINKYKLRSNIKSYNLSGMGCSASLISVDVARDLLQVHPNSNAIIISTEIITPNYYKGNERAMLLPNCLFRMGGAAILLSNRRSDRWRAKYKLCHLVRTHRGADDKSYNCVMEQEDKNGNV 320          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.069e-45
Identity = 84/128 (65.62%), Postives = 105/128 (82.03%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGK 385
            PTPSLSAM++N+YKLR N+KSFNL GMGCSAG+ISIDLA+D+LQVH N+ AVVVSTE IT N+Y GN++AML+PNCLFR+GG+AI           +KY+LVH VRTHKGA +KA+ CV++E+D  GK
Sbjct:  216 PTPSLSAMIVNKYKLRGNVKSFNLGGMGCSAGVISIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAILLSNKGKDRRRSKYKLVHTVRTHKGAVEKAFNCVYQEQDDNGK 343          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.035e-44
Identity = 81/128 (63.28%), Postives = 107/128 (83.59%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGK 385
            PTPSLSAM++N+YKLR NI+S+NL GMGCSAG+I++DLA+D+L VH N+ AVVVSTE IT N+Y GN+++ML+PNCLFR+GG+A+           +KYRLVHVVRTH+GADDKA+RCV++E+D  G+
Sbjct:  220 PTPSLSAMIVNKYKLRGNIRSYNLGGMGCSAGVIAVDLAKDMLLVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYRLVHVVRTHRGADDKAFRCVYQEQDDTGR 347          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.689e-43
Identity = 83/129 (64.34%), Postives = 103/129 (79.84%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKV 388
            PTPSLSAM++N YK+R +IKS+NL GMGCSAGLISIDLA +LL+ +PNS AVVVSTE IT N+Y GN+R+MLL NC+FRMGGAAI           +KY LV+VVRTHKG+DDK Y CV+++ED+ G +
Sbjct:  230 PTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTI 358          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.689e-43
Identity = 80/126 (63.49%), Postives = 100/126 (79.37%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKE 379
            PTPSLSAM++N+YKLR N+ S+NL GMGCSAGLISIDLA+ LLQV PNS A+VVSTE IT N+Y GN+R+MLL NC+FRMGGAA+           +KY+L+H VRTHKG+DD A+ CV++ ED +
Sbjct:  213 PTPSLSAMIVNKYKLRGNVLSYNLGGMGCSAGLISIDLAKQLLQVQPNSYALVVSTENITLNWYLGNDRSMLLSNCIFRMGGAAVLLSNRSSDRCRSKYQLIHTVRTHKGSDDNAFNCVYQREDND 338          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.265e-42
Identity = 77/125 (61.60%), Postives = 103/125 (82.40%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDK 376
            PTPSLSAM++N+YKLR NIKSFNL GMGCSAG+I++DLA D+LQ+H N+ A+VVSTE IT N+Y GN++AML+PNCLFR+GG+A+           +KY+LVH VRTHKG+D+ A+ CV++E+D+
Sbjct:  190 PTPSLSAMIVNKYKLRGNIKSFNLGGMGCSAGVIAVDLASDMLQIHRNTFALVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAVLLSNKPLDRKRSKYKLVHTVRTHKGSDENAFNCVYQEQDE 314          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.265e-42
Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGK 385
            PTPSLSAM++N+YKLR NI S+NL GMGCSAGLISIDLA+ +LQV PNS A+VVSTE IT N+Y GN+R+MLL NC+FRMGGAA+           +KY+L+H VRTHKGADD A+ CV++ ED   +
Sbjct:  219 PTPSLSAMIVNKYKLRGNILSYNLGGMGCSAGLISIDLAKQMLQVQPNSYALVVSTENITLNWYLGNDRSMLLSNCIFRMGGAAVLLSNRSSDRSRSKYQLIHTVRTHKGADDNAFGCVYQREDNNAE 346          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.682e-42
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKV 388
            PTPSLSAM++N +KLRSNIKSFNL GMGCSAG+I+IDLA+DLL VH N+ A+VVSTE IT   Y G  R+M++ NCLFR+GGAAI           +KY+LVH VRTH GADDK++RCV +E+D+ GK+
Sbjct:  195 PTPSLSAMVVNTFKLRSNIKSFNLGGMGCSAGVIAIDLAKDLLHVHKNTYALVVSTENITQGIYAGENRSMMVSNCLFRVGGAAILLSNKSGDRRRSKYKLVHTVRTHTGADDKSFRCVQQEDDESGKI 323          
BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.068e-41
Identity = 76/127 (59.84%), Postives = 102/127 (80.31%), Query Frame = 2
Query:    2 PTPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEG 382
            PTPSLSAM+IN YK+R NI S+NL GMGCSAG+I+IDLARD+LQ +PNS AVVVSTE++  N+Y G++++M++PNC FRMG +A+           AKYRL H+VRTHK ADD+++R V++EED++G
Sbjct:  229 PTPSLSAMVINHYKMRGNILSYNLGGMGCSAGIIAIDLARDMLQSNPNSYAVVVSTEMVGYNWYVGSDKSMVIPNCFFRMGCSAVMLSNRRRDFRHAKYRLEHIVRTHKAADDRSFRSVYQEEDEQG 355          
The following BLAST results are available for this feature:
BLAST of CX289350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS6_ARATH4.953e-5579.073-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS5_ARATH7.152e-5475.973-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH6.069e-4565.633-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH1.035e-4463.283-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS1_ARATH9.689e-4364.343-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS17_ARATH9.689e-4363.493-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS2_ARATH1.265e-4261.60Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS19_ARATH1.265e-4263.283-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS18_ARATH3.682e-4262.793-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS10_ARATH9.068e-4159.843-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC02012A05SK IF1 Citrus clementina cDNA clone C02012A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289350 ID=CX289350; Name=CX289350; organism=Citrus clementina; type=EST; length=390bp
GCCGACGCCGTCGCTATCGGCCATGTTGATTAACCAGTACAAGCTGAGGA
GTAACATCAAGAGCTTCAATCTTTCGGGTATGGGCTGCAGTGCCGGGCTT
ATATCCATCGACTTAGCTCGGGATCTTCTACAAGTGCATCCGAATTCAAA
CGCTGTCGTTGTGAGCACGGAGATCATTACACCGAACTACTACCAAGGGA
ATGAACGAGCCATGCTCCTTCCGAATTGCCTCTTCCGCATGGGTGGAGCC
GCGATCTTGTTATCGAACCGGAGGCGCAACCGTTCCCGAGCCAAGTACCG
GCTGGTTCACGTGGTTCGAACCCACAAAGGAGCTGACGACAAGGCTTATC
GCTGCGTGTTTGAAGAGGAAGACAAAGAGGGCAAAGTAGG
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