CX289351

Overview
NameCX289351
Unique NameCX289351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length365
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8968 contig Ccv1_Contig8968:304..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289351 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 2
Query:  155 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE 346
            DYY +LG+  +ATPE+IKKAY    +  HPD++ DDP        INE Y VLSDP +R  YD+
Sbjct:    4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQ 67          
The following BLAST results are available for this feature:
BLAST of CX289351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ_CARHZ1.152e-1150.00Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02012A06SK IF1 Citrus clementina cDNA clone C02012A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289351 ID=CX289351; Name=CX289351; organism=Citrus clementina; type=EST; length=365bp
ATCATTGAATAGTTTCAGCTCAAGAAGTTCATCGCGCTTGCTGGCTAATA
ACAGTAGCAGTTTGAGCTTGATGGGTCACAGTAGCAAGAGAAGAAGCTGT
GGCAGAGCGAGGGTTACCGCAGAGGACTCTGCTTCAACGGATGCCATTGC
TGATGACTACTATGCTGTTTTGGGATTGCTTCCGGATGCTACACCAGAGC
AGATCAAGAAAGCTTACTATAATTGCATGAAAGCATGCCATCCCGATTTA
AGTGGCGATGATCCGGAGACCACAAATTTCTGCATGTTCATTAATGAGGT
TTATGCGGTTCTCAGTGACCCGGTGCAGCGGATGGTTTATGATGAAATTC
ACGGTTATTCATTGA
back to top