CX289360

Overview
NameCX289360
Unique NameCX289360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8930 contig Ccv1_Contig8930:48..442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289360 vs. ExPASy Swiss-Prot
Match: FBL10_ARATH (F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.391e-33
Identity = 65/114 (57.02%), Postives = 92/114 (80.70%), Query Frame = 3 
Query:   54 KSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGK 395
            +SLD LPAALL TI+TKLDVAS+ S+A+TC T ++C  ++L+F  +FH+ +++LS E ++PLL PN  L SLK+DCG+L +SAI++++RP+L E+ LHNC DFSG L+SEIG K
Sbjct:   21 RSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHIFNVSLSMETVRPLLFPNQQLSSLKLDCGRLGNSAIDILVRPSLREISLHNCRDFSGDLISEIGRK 134
The following BLAST results are available for this feature:
BLAST of CX289360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL10_ARATH1.391e-3357.02F-box/LRR-repeat protein 10 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC02012B06SK IF1 Citrus clementina cDNA clone C02012B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289360 ID=CX289360; Name=CX289360; organism=Citrus clementina; type=EST; length=395bp
GAGTCTGCGAGAGAAGAAAGCAAAGGCAAATGGCCGCTGCCGAAACCAGC
GGCAAGAGCCTAGATCAGCTGCCTGCGGCTCTCTTGTGTACCATAATCAC
AAAGCTTGACGTGGCTTCGATCTCCTCCGTTGCTGCTACTTGCAGTACTT
TCAGGGCCTGTGCCGCTCAGATCCTCTCTTTTCTGACCAGTTTCCATCTT
CTTGATATTGCACTGTCGACGGAAATTATCAAGCCTTTGTTACCACCAAA
TCCATATCTTAGGAGCTTAAAGGTTGATTGTGGTAAGCTTGATGATTCAG
CCATTGAGCTTATGCTTCGGCCTACATTGCACGAGCTTTGTCTGCATAAT
TGTGCAGATTTTAGTGGGAAGTTGCTTTCTGAGATCGGAGGGAAA
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