CX289367

Overview
NameCX289367
Unique NameCX289367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.747e-44
Identity = 79/120 (65.83%), Postives = 98/120 (81.67%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF G
Sbjct:  228 VTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQG 347          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.747e-44
Identity = 79/120 (65.83%), Postives = 98/120 (81.67%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF G
Sbjct:  228 VTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQG 347          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.747e-44
Identity = 79/120 (65.83%), Postives = 98/120 (81.67%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF G
Sbjct:  236 VTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQG 355          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.747e-44
Identity = 79/120 (65.83%), Postives = 98/120 (81.67%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF G
Sbjct:  233 VTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQG 352          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TBL1X_MOUSE (F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 2.282e-44
Identity = 78/120 (65.00%), Postives = 97/120 (80.83%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF G
Sbjct:  241 VTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQG 360          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TBL1Y_HUMAN (F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.132e-43
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN +GTLLA GSYDG ARIW+ NG+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN++FA+ STD  I+VC++G + P+KTF G
Sbjct:  238 VTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQG 357          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TBL1X_MACFA (F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.132e-43
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN  GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN++FA+ STD  I+VC++G +RP+KTF G
Sbjct:  283 VTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQG 402          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: TBL1X_HUMAN (F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.479e-43
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN  GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF G
Sbjct:  291 VTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQG 410          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 6.214e-42
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = 2
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            VT+LDWN +G+LLATGSYDG ARIW T+G L  TL +HKGPIF+LKWNK G+Y+L+   DKT I+WD  T +  QQF FHS P LDVDW+ N +FA+ STD  I+VC++G N PIKTF G
Sbjct:  413 VTSLDWNCDGSLLATGSYDGYARIWKTDGRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKG 532          
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: SIF2_YEAST (SIR4-interacting protein SIF2 OS=Saccharomyces cerevisiae GN=SIF2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 2
Query:    8 RVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------------HSGP---TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 370
            +VT L W+ +G  + TG  +G+ R+W+  G L   L+ H+ PI S+KWNK G ++++   +   I+W+V +    Q FE             HSG     +DV+W ++  F        I+V +I E  P     G
Sbjct:  222 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG 357          
The following BLAST results are available for this feature:
BLAST of CX289367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TBL1R_MOUSE1.747e-4465.83F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TBL1R_HUMAN1.747e-4465.83F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TB1RB_XENLA1.747e-4465.83F-box-like/WD repeat-containing protein TBL1XR1-B ... [more]
TB1RA_XENLA1.747e-4465.83F-box-like/WD repeat-containing protein TBL1XR1-A ... [more]
TBL1X_MOUSE2.282e-4465.00F-box-like/WD repeat-containing protein TBL1X OS=M... [more]
TBL1Y_HUMAN1.132e-4364.17F-box-like/WD repeat-containing protein TBL1Y OS=H... [more]
TBL1X_MACFA1.132e-4364.17F-box-like/WD repeat-containing protein TBL1X OS=M... [more]
TBL1X_HUMAN1.479e-4364.17F-box-like/WD repeat-containing protein TBL1X OS=H... [more]
EBI_DROME6.214e-4262.50F-box-like/WD repeat-containing protein ebi OS=Dro... [more]
SIF2_YEAST3.553e-1330.15SIR4-interacting protein SIF2 OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionC02012C02SK IF1 Citrus clementina cDNA clone C02012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289367 ID=CX289367; Name=CX289367; organism=Citrus clementina; type=EST; length=370bp
CTCGTGCCGTGTCACAACACTTGATTGGAATGGCGAGGGGACATTACTTG
CGACTGGTTCATATGATGGCCAGGCAAGAATATGGAGTACAAATGGCGAT
CTGAAGTGTACCTTGAGTAAACATAAAGGACCCATATTTTCCCTTAAGTG
GAACAAGAAGGGTGATTACCTTCTCACCGGAAGCTGTGATAAAACTGCAA
TAGTATGGGATGTGAAGACAGAGGAATGGAAACAGCAATTTGAATTTCAT
TCAGGTCCAACGCTTGATGTTGACTGGCGCAATAATGTTTCATTTGCCAC
AAGCTCGACAGACAACATGATATATGTGTGTAAAATTGGGGAAAACCGCC
CTATTAAAACTTTTGCAGGG
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