CX290056
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.942e-49 Identity = 104/202 (51.49%), Postives = 141/202 (69.80%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCG---QKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLP 613 K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEV++IIFS KG+LYEF+SS MQ T++RY R+T++R + E MQ LK+E ANM++KIE +E S+RKLLG+ +G+ + +S++ IRARK Q+F EQ+ QLK+KE+ L +N +L K G + W Q + +S SS++ET+LFIGLP Sbjct: 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGD-EESSPSSEVETQLFIGLP 209
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43 Identity = 99/204 (48.53%), Postives = 135/204 (66.18%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQS--TQRKEAVN---NCSQSGQSSDIETELFIGLP 613 K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +G+LYEF+S+ QKT+ERY YT+E I +++ ++Q+K + + +K+E +E +RKLLG+ L + RSL SIR RK +L EQ+ +L+EKE L +DN L KC +P + T R E N N + + + D+ETELFIGLP Sbjct: 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAEDENPDRNINTTNDNMDVETELFIGLP 211
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38 Identity = 96/212 (45.28%), Postives = 129/212 (60.85%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIE---------TELFIGLPEMR 622 K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+IIFS +G+LYEF SSS + KT+ERY + ++ + + QQ K E + KIEH+E+S RK++G+ L + + RSL IRA+K QL E+ +LKEKER L+ +N L KC Q + + S S +S+++ T+LFIG PE R Sbjct: 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDN-SQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKC-------EMQGRGIIGRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37 Identity = 88/217 (40.55%), Postives = 135/217 (62.21%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK-----------------CGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLP 613 K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRLYEF+S+ +QKT++RY YT++ ++ +++ +QQ+K + + +K+E ++ S+RK+LG++L + +SL IR +K +L +Q+ +LKEKER LL+DN L K W + ++ + + + D+ET+L+IGLP Sbjct: 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDV---PMTSSTAGAADAMDVETDLYIGLP 221
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 88/217 (40.55%), Postives = 135/217 (62.21%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK-----------------CGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLP 613 K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRLYEF+S+ +QKT++RY YT++ ++ +++ +QQ+K + + +K+E ++ S+RK+LG++L + +SL +IR +K +L Q+ +LKEKER LL+DN L K W + ++ + + + D+ET+L+IGLP Sbjct: 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDV---PMTSSTAGAADAMDVETDLYIGLP 221
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.363e-36 Identity = 95/213 (44.60%), Postives = 129/213 (60.56%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMER-YMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPW----------QQSTQRKEAVNNCSQSGQSSDIETELFIGLPEMR 622 K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA++IFS + +LYEFSSS + T+ERY R +E I N QQ + E + + +KIE +E+S+RKLLG+ + + + RSL IRA+K QL E++ +LK +ER L+++N L ++ W QST VN + ++ET LFIG PE R Sbjct: 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKE--IGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDL-----KEKWLGMGTATIASSQSTLSSSEVN----IDDNMEVETGLFIGPPETR 210
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32 Identity = 78/159 (49.06%), Postives = 100/159 (62.89%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493 K+IEN +RQVTFSKRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF S+ + KTLERY Q N + Q HE++ + K E ++ +QR LLG+DLG + +L R RK QL EQ+ +L+ KER L E N +L Sbjct: 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSE-TQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQL 166
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32 Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCS 562 ++IEN SRQVTF+KRRNG+LKKAYELS+LCDAEVA+++FS GRLY+F SSS M KTLERY RY Q MQ E N+ +E ++ SQR LLG+DL R+L+ IR+RK Q+ +++ LK KE++L + N L K + + + + NCS Sbjct: 9 QRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCS 191
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.793e-30 Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502 K+IEN +RQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF SSS M KTL+RY + + N + ++ E + + E+++ QR LLG+DLG + SL+ +R+ K Q +Q+ L+ KE++LLE N L +K Sbjct: 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMK 171
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30 Identity = 78/167 (46.71%), Postives = 104/167 (62.28%), Query Frame = 2 Query: 17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYT----EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502 K+IEN +RQVTF+KRRNG+LKKAYELSVLCDAEVA+I+FS +G+LYEF S+S M KTLERY R + E Q + Y + LK + K++ ++ S R LLG+DLG + +SLR IR+ K Q +Q+ L++KE +L E N L K Sbjct: 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLK-----LKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK 170 The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 118
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bpback to top |