CX290056

Overview
NameCX290056
Unique NameCX290056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14443 contig Ccv1_Contig14443:141..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.942e-49
Identity = 104/202 (51.49%), Postives = 141/202 (69.80%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCG---QKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLP 613
            K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEV++IIFS KG+LYEF+SS MQ T++RY R+T++R   +   E  MQ LK+E ANM++KIE +E S+RKLLG+ +G+ +            +S++ IRARK Q+F EQ+ QLK+KE+ L  +N +L  K G    + W    Q      +  +S  SS++ET+LFIGLP
Sbjct:    9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGD-EESSPSSEVETQLFIGLP 209          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 99/204 (48.53%), Postives = 135/204 (66.18%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQS--TQRKEAVN---NCSQSGQSSDIETELFIGLP 613
            K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +G+LYEF+S+  QKT+ERY  YT+E  I    +++ ++Q+K +   + +K+E +E  +RKLLG+ L   +            RSL SIR RK +L  EQ+ +L+EKE  L +DN  L  KC  +P   +  T R E  N   N + +  + D+ETELFIGLP
Sbjct:    9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAEDENPDRNINTTNDNMDVETELFIGLP 211          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 96/212 (45.28%), Postives = 129/212 (60.85%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCSQSGQSSDIE---------TELFIGLPEMR 622
            K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+IIFS +G+LYEF SSS + KT+ERY +  ++   +    +   QQ K E   +  KIEH+E+S RK++G+ L + +            RSL  IRA+K QL  E+  +LKEKER L+ +N  L  KC         Q +  +   S S  +S+++         T+LFIG PE R
Sbjct:    9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDN-SQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKC-------EMQGRGIIGRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37
Identity = 88/217 (40.55%), Postives = 135/217 (62.21%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK-----------------CGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLP 613
            K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRLYEF+S+  +QKT++RY  YT++  ++   +++ +QQ+K +   + +K+E ++ S+RK+LG++L   +            +SL  IR +K +L  +Q+ +LKEKER LL+DN  L  K                      W +        ++ + +  + D+ET+L+IGLP
Sbjct:    9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDV---PMTSSTAGAADAMDVETDLYIGLP 221          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 88/217 (40.55%), Postives = 135/217 (62.21%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK-----------------CGQKPWQQSTQRKEAVNNCSQSGQSSDIETELFIGLP 613
            K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRLYEF+S+  +QKT++RY  YT++  ++   +++ +QQ+K +   + +K+E ++ S+RK+LG++L   +            +SL +IR +K +L   Q+ +LKEKER LL+DN  L  K                      W +        ++ + +  + D+ET+L+IGLP
Sbjct:    9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDV---PMTSSTAGAADAMDVETDLYIGLP 221          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.363e-36
Identity = 95/213 (44.60%), Postives = 129/213 (60.56%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMER-YMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPW----------QQSTQRKEAVNNCSQSGQSSDIETELFIGLPEMR 622
            K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA++IFS + +LYEFSSS +  T+ERY R  +E  I  N       QQ + E + + +KIE +E+S+RKLLG+ + + +            RSL  IRA+K QL  E++ +LK +ER L+++N  L     ++ W           QST     VN       + ++ET LFIG PE R
Sbjct:    9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKE--IGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDL-----KEKWLGMGTATIASSQSTLSSSEVN----IDDNMEVETGLFIGPPETR 210          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32
Identity = 78/159 (49.06%), Postives = 100/159 (62.89%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 493
            K+IEN  +RQVTFSKRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF S+ + KTLERY       Q   N +    Q   HE++ +  K E ++ +QR LLG+DLG  +             +L   R RK QL  EQ+ +L+ KER L E N +L
Sbjct:    9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSE-TQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQL 166          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32
Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTQRKEAVNNCS 562
            ++IEN  SRQVTF+KRRNG+LKKAYELS+LCDAEVA+++FS  GRLY+F SSS M KTLERY RY    Q         MQ    E  N+   +E ++ SQR LLG+DL                R+L+ IR+RK Q+  +++  LK KE++L + N  L  K  +   + +  +     NCS
Sbjct:    9 QRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCS 191          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.793e-30
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502
            K+IEN  +RQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF SSS M KTL+RY + +       N   + ++    E   +  + E+++  QR LLG+DLG   +            SL+ +R+ K Q   +Q+  L+ KE++LLE N  L +K
Sbjct:    9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMK 171          
BLAST of CX290056 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30
Identity = 78/167 (46.71%), Postives = 104/167 (62.28%), Query Frame = 2
Query:   17 KKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYT----EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 502
            K+IEN  +RQVTF+KRRNG+LKKAYELSVLCDAEVA+I+FS +G+LYEF S+S M KTLERY R +    E  Q  +     Y + LK     +  K++ ++ S R LLG+DLG  +            +SLR IR+ K Q   +Q+  L++KE +L E N  L  K
Sbjct:    9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLK-----LKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK 170          
The following BLAST results are available for this feature:
BLAST of CX290056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
SOC1_ARATH2.942e-4951.49MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD50_ORYSJ9.167e-4348.53MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL14_ARATH2.336e-3845.28Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD56_ORYSJ1.978e-3740.55MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI2.583e-3740.55MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL19_ARATH6.363e-3644.60Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS6_ORYSJ9.508e-3249.06MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD34_ORYSJ9.508e-3243.72MADS-box transcription factor 34 OS=Oryza sativa s... [more]
SEP1_ARATH1.793e-3045.40Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
CMB1_DIACA3.995e-3046.71MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02020A07SK IF1 Citrus clementina cDNA clone C02020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290056 ID=CX290056; Name=CX290056; organism=Citrus clementina; type=EST; length=741bp
GAATTCGGCACGAGGGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGA
CATTTTCAAAGCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCG
GTTCTTTGCGATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAG
GCTCTATGAGTTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACT
ATAGATACACAGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATAC
ATGCAGCAATTGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCA
TATTGAAGTTTCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTA
CCAATGAGGAACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGC
AGCATCCGAGCAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACT
TAAAGAAAAGGAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAA
AGTGTGGACAAAAGCCATGGCAGCAATCGACCCAACGGAAAGAAGCTGTA
AACAATTGCAGCCAAAGTGGCCAGAGTTCAGACATCGAGACTGAATTGTT
CATCGGACTGCCTGAAATGCGTGCCGCATAGCCAGCAGCATTGGCTTCCT
GCAATCTTCTAGGCACGTAAACGACATTTGCAGCTCGTAAGTTGTAGCAC
ATCAATTAATTATTCTAACATGTAGAATAATTGCTCTTCTG
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