CX290061

Overview
NameCX290061
Unique NameCX290061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig317 contig Ccv1_Contig317:53..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290061 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 1.237e-71
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 2 
Query:   65 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 568
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA              IA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CX290061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH1.237e-7176.79ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC02020A12SK IF1 Citrus clementina cDNA clone C02020A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290061 ID=CX290061; Name=CX290061; organism=Citrus clementina; type=EST; length=742bp
GAGGGAGCTGAGAAAATCAAAAAATTAAGAGAAAAGAAAAAGGGAAAATC
AGTCGAGAGAGAAAATGAGCGGAGCTGGCAAGAAAATAGCTGACGTCGCA
TTCAAGGCCGGAAGGACCATAGATTGGGAAGGGATGGCGAAGATGCTGGT
CTCCGATGAGGCACGCAAGGAGTTCGCCACTCTCCGTCGCGCTTTCGACG
AAGTCAACTCCACTCTTCAGACCAAGTTCAGCCAGGAACCTGAACCTATT
GACTGGGAGTATTACAGAAAAGGAATTGGCTCTCGCTTGGTGGACATGTA
CAAACAGGCTTATGAAAGCATAGAGGTCCCAAAGTATGTAGACAAAGTCA
CCCCTGAATACAAATCTAAGTTTGATGCTTTGCTGGTGGAATTGAAAGAA
GCAGAAGGGAAATCTCTTAAGGAGTCCGAGCGTTTGGAGAAAGAAATAGC
TGAGGTTCAAGAACTGAAGGAAAAGATCAGCACCATGACCGCTGAGGAAT
ACTTTGAAAAGCATCCGGAGCTCAAAAAGAAGTTCGATGATGAAATCAGG
AATGACTACTGGGGCTATTGATCACACATTTGCTCAATTTAGCAGCTGCA
TTTCCTAGCTCGGCCAAGATTTTCTGAAGTTGCCCTGTTTTCCCAGCTTG
TTAAATAATAATGATCATTCGAATTGTTTTTGCATAAACCTGTTGCTCAT
GGTTTCAAAAATTTGAGCTTTGATACATCTATGCTAAACATT
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