CX290065

Overview
NameCX290065
Unique NameCX290065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:432..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.536e-60
Identity = 116/160 (72.50%), Postives = 125/160 (78.12%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 483
            +I G+ AGRIVMGLFG+VVPKT ENFRALCT GEK YGYKG SFHRIIKDFMIQ            ISIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG VI+GM +VR LES ET   D PK  CRI   GELPLDA
Sbjct:  102 EIGGEVAGRIVMGLFGEVVPKTVENFRALCT-GEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPLDA 260          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.993e-59
Identity = 114/160 (71.25%), Postives = 127/160 (79.38%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD-YPKVPCRIINSGELPLD 480
            +I G+ AGRIV+GLFGD VPKT ENF+ L T G KGYGY+G  FHRII +FMIQ            +SIYGS FEDESF LKHVGPGVLSMANAGPNTNGSQFFICTV TPWLDNRHVVFGHVI+G+DVV++LES ETS+ D  PK PC+I  SGELPLD
Sbjct:   89 EIGGESAGRIVIGLFGDAVPKTVENFKTLST-GAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGELPLD 247          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.206e-53
Identity = 108/161 (67.08%), Postives = 120/161 (74.53%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTA----GEK-GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 480
            GKP GRIVMGL+G  VPKTAENFRAL T     GE  GYGY+G SFHRIIK+FMIQ             SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFICTVKT WLDNRHVVFGHV++GMDVV  +E+V+TSR D P  P  I  SGELP++
Sbjct:   55 GKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 100/159 (62.89%), Postives = 121/159 (76.10%), Query Frame = 1
Query:    1 GDIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 477
            G+  GK AGRIV+GL+GD VP+T ENFRALCT GEKG+GYKG +FHR+I+DFMIQ             S+YG +F+DE+F L HVGPGVLSMANAGPNTNGSQFFICT+KT WLD RHVVFG VI+GM+VV+ +E  ET R D P+    I + G+LP+
Sbjct:   99 GNPVGKLAGRIVIGLYGDDVPQTVENFRALCT-GEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQLPM 256          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.067e-48
Identity = 94/135 (69.63%), Postives = 105/135 (77.78%), Query Frame = 1
Query:    4 DIAGKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 408
            D  GKP GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   53 DANGKPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 186          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 408
            G+P GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   55 GQPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 185          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 408
            G+P GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   55 GQPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 185          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.483e-47
Identity = 95/154 (61.69%), Postives = 109/154 (70.78%), Query Frame = 1
Query:   16 KPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 477
            K  GRIV+GL+G+VVPKT ENFRAL T GEKGYGYK   FHR+IKDFMIQ             SIYG  F DE+F L+H GPG+LSMANAG +TNGSQFFI TV T WLD RHVVFG VI+GMDVV  +E+ +T   D P  P  I + GELP+
Sbjct:   41 KDLGRIVLGLYGEVVPKTVENFRALAT-GEKGYGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGELPV 193          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.856e-47
Identity = 91/132 (68.94%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 408
            G+P GR+V+ L  DVVPKTAENFRALCT GEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKH GPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   57 GQPLGRVVLELKADVVPKTAENFRALCT-GEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 187          
BLAST of CX290065 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.988e-47
Identity = 92/133 (69.17%), Postives = 103/133 (77.44%), Query Frame = 1
Query:   13 GKPAGRIVMGLFGDVVPKTAENFRALCTAGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 411
            G+P GRIVM L  DVVPKTAENFRALCT GEKG+GYKG  FHR+I +FM Q             SIYG+ FEDE+F LKH GPG+L MANAGPNTNGSQFFI T KT WLDNRHVVFG V++GMDVV+KLES+
Sbjct:   14 GQPVGRIVMELRSDVVPKTAENFRALCT-GEKGFGYKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESL 145          
The following BLAST results are available for this feature:
BLAST of CX290065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
CP20C_ARATH3.536e-6072.50Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
CYPB_VICFA2.993e-5971.25Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB_CRYNE3.206e-5367.08Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CP20B_ARATH1.218e-5262.89Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIF_HUMAN1.067e-4869.63Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_RAT1.180e-4769.70Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE1.180e-4769.70Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_ORPSP4.483e-4761.69Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIF_BOVIN5.856e-4768.94Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_BLAGE9.988e-4769.17Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02020B04SK IF1 Citrus clementina cDNA clone C02020B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290065 ID=CX290065; Name=CX290065; organism=Citrus clementina; type=EST; length=722bp
GGAGATATTGCAGGTAAACCTGCAGGTAGAATAGTAATGGGCCTTTTTGG
AGATGTTGTTCCGAAAACAGCTGAGAACTTTCGTGCACTGTGTACAGCAG
GTGAGAAAGGATATGGTTACAAAGGATGCTCCTTCCACCGTATTATTAAA
GATTTTATGATCCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGAGG
CATCAGTATTTATGGTTCCAGCTTTGAAGATGAGAGCTTTGTCTTGAAGC
ATGTTGGACCTGGAGTATTAAGCATGGCCAATGCAGGTCCTAATACCAAT
GGGAGCCAATTTTTCATTTGCACAGTGAAGACACCATGGTTGGACAACCG
CCATGTTGTGTTTGGACATGTCATTGATGGAATGGACGTTGTGAGGAAAC
TTGAATCTGTAGAGACAAGCAGGACAGATTACCCAAAGGTGCCATGTAGA
ATTATCAATAGTGGAGAACTACCATTAGATGCCTGATCTGCCAGCTCTGA
TATCTTACCACAACCATAAAATACGACTTTTGTAATTCATCACTTTTGTG
GAGCCAAATGGTTTTTGTAACTGTTATCTACATGAAAGCATGTTCCGCTT
AGTTGAATTAGCTGAGAAACTCAAGAATAATACTCGGTAAGCTCATGGTA
GAGCTGAATATGTACTATTGTTCGGTTGAATGTATATGTGCAGATTCCAC
TTGTAGTAAACAGTCAATAATA
back to top