CX290070

Overview
NameCX290070
Unique NameCX290070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig322 contig Ccv1_Contig322:119..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT6_ARATH (Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.642e-88
Identity = 159/181 (87.85%), Postives = 173/181 (95.58%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVP 545
            TVLDPVVTAVALGRKISCVTYSISKF+E+ISPIKAVAL+R+REKDAA+IK+LLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQ++F+GTT RG+KLLDPY+ FMNPRPTYEITFL Q+P ELT KGGKS IEVANYIQRVL GTLGFECTN TRKDKY++LAGTDGRVP
Sbjct:  315 TVLDPVVTAVALGRKISCVTYSISKFSELISPIKAVALTRQREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSMFNGTTTRGYKLLDPYFAFMNPRPTYEITFLKQIPAELTCKGGKSPIEVANYIQRVLGGTLGFECTNFTRKDKYAMLAGTDGRVP 495          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT4_ARATH (Glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=GPAT4 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.244e-70
Identity = 126/183 (68.85%), Postives = 156/183 (85.25%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVK-GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPS 548
            T LDP++ A+ALGRKI+CVTYS+S+ + ++SPI AVAL+R+R  DAA ++QLLE+GDLVICPEGTTCREP+LLRFSALFAEL+DRIVPVA+N KQ +F+GTTVRG K  DPY+ FMNPRP+YE TFL++LP E+TV  GGK+  EVANY+Q+V+ G LGFECT LTRKDKY +L G DG+V S
Sbjct:  313 TALDPIIIAIALGRKITCVTYSVSRLSLMLSPIPAVALTRDRVADAARMRQLLEKGDLVICPEGTTCREPYLLRFSALFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPFEVANYVQKVIGGVLGFECTELTRKDKYLLLGGNDGKVES 495          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT8_ARATH (Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.044e-68
Identity = 124/183 (67.76%), Postives = 155/183 (84.70%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVK-GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPS 548
            T LDP++ A+ALGRKI CVTYS+S+ + ++SPI AVAL+R+R  DAA++++LLE+GDLVICPEGTTCRE +LLRFSALFAEL+DRIVPVA+N KQ +F+GTTVRG K  DPY+ FMNPRP+YE TFL++LP E+TV  GGK+ IEVANY+Q+V+   LGFECT LTRKDKY +L G DG+V S
Sbjct:  312 TALDPIIVAIALGRKICCVTYSVSRLSLMLSPIPAVALTRDRATDAANMRKLLEKGDLVICPEGTTCREEYLLRFSALFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLGFECTELTRKDKYLLLGGNDGKVES 494          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT5_ARATH (Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 9.768e-67
Identity = 125/180 (69.44%), Postives = 142/180 (78.89%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 542
            T++DPVV +  LGR I  VTYSIS+ +EI+SPI  V L+R R+ DAA IKQ L +GDLV+CPEGTTCREPFLLRFSALFAELTDRIVPVA+N +   FH TT RG K LDP + FMNPRP YEITFLNQLP E T   GKS  +VANY+QR+LA TLGFECTN TRKDKY +LAG DG V
Sbjct:  302 TLMDPVVLSYVLGRSIPAVTYSISRLSEILSPIPTVRLTRIRDVDAAKIKQQLSKGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEITFLNQLPMEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 481          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT7_ARATH (Glycerol-3-phosphate acyltransferase 7 OS=Arabidopsis thaliana GN=GPAT7 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.247e-62
Identity = 118/180 (65.56%), Postives = 136/180 (75.56%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 542
            T++DPVV +  LGR I  VTYSIS+ +EI+SPI    L+R R+ DA  IK+ L  GDLV+ PEGTTCREPFLLRFSALFAELTD IVPVA+N +   FH TT RG K LDP + FMNPRP YE+TFLNQL  E T   GKS  +VANY+QR+LA TLGFECTN TRKDKY +LAG DG V
Sbjct:  300 TLMDPVVLSYVLGRSIPAVTYSISRLSEILSPIPTFRLTRIRDVDAEMIKKELSNGDLVVYPEGTTCREPFLLRFSALFAELTDNIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEVTFLNQLEVEATCSSGKSPYDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 479          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT1_ARATH (Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.181e-58
Identity = 106/180 (58.89%), Postives = 140/180 (77.78%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 542
            T+LDPV    +LG+ ++ VTYS+SKF+E I+P+K V+L R+R+KD   +++LL +GDLV+CPEGTTCREP+LLRFS LFAELT+ IVPVA++ + ++F+GTT  G K LDP +  MNPRP Y +  L +LP E+T  GGKS+ EVAN+IQ  LA  LGFECTNLTR+DKY +LAG +G V
Sbjct:  405 TLLDPVFLTTSLGKPLTAVTYSLSKFSEFIAPLKTVSLKRDRKKDGEAMQRLLSKGDLVVCPEGTTCREPYLLRFSPLFAELTEDIVPVAVDARVSMFYGTTASGLKCLDPIFFLMNPRPVYCLEILKKLPKEMTCAGGKSSFEVANFIQGELARVLGFECTNLTRRDKYLVLAGNEGIV 584          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT2_ARATH (Probable glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=GPAT2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.915e-46
Identity = 95/187 (50.80%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRK-ISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQL--PPELTVKG----GKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 542
            T+LDP+  + AL +K +  VTYS+S+ +E+++PIK V L+R+R KD   +++LL +GDLV+CPEGTTCREP+LLRFS LF+E+ D IVPVAI++  T F+GTT  G K  DP +  +NP P+Y +  L+ +      T +G    GK   EVAN++Q  +   LGFECTNLTR+DKY ILAG +G V
Sbjct:  341 TLLDPLYISYALRKKNMKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAMEKLLSQGDLVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKAFDPIFFLLNPFPSYTVKLLDPVSGSSSSTCRGVPDNGKVNFEVANHVQHEIGNALGFECTNLTRRDKYLILAGNNGVV 527          
BLAST of CX290070 vs. ExPASy Swiss-Prot
Match: GPAT3_ARATH (Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=GPAT3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.278e-46
Identity = 97/182 (53.30%), Postives = 125/182 (68.68%), Query Frame = 3
Query:    3 TVLDPVVTAVALGRK-ISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLP-PELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 542
            T+LDP+  A AL +K I  VTYS+S+ +EI++PIK V L+R+R  D   +++LL EGDLV+CPEGTTCREP+LLRFS LF E++D IVPVA+    T F+GTT  G K LDP +  ++P PTY I FL+ +         GK   EVAN +Q  +   L FECT+LTRKDKY ILAG +G V
Sbjct:  336 TLLDPLYVAFALRKKNIKTVTYSLSRVSEILAPIKTVRLTRDRVSDGQAMEKLLTEGDLVVCPEGTTCREPYLLRFSPLFTEVSDVIVPVAVTVHVTFFYGTTASGLKALDPLFFLLDPYPTYTIQFLDPVSGATCQDPDGKLKFEVANNVQSDIGKALDFECTSLTRKDKYLILAGNNGVV 517          
The following BLAST results are available for this feature:
BLAST of CX290070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GPAT6_ARATH2.642e-8887.85Glycerol-3-phosphate acyltransferase 6 OS=Arabidop... [more]
GPAT4_ARATH3.244e-7068.85Glycerol-3-phosphate acyltransferase 4 OS=Arabidop... [more]
GPAT8_ARATH1.044e-6867.76Probable glycerol-3-phosphate acyltransferase 8 OS... [more]
GPAT5_ARATH9.768e-6769.44Glycerol-3-phosphate acyltransferase 5 OS=Arabidop... [more]
GPAT7_ARATH4.247e-6265.56Glycerol-3-phosphate acyltransferase 7 OS=Arabidop... [more]
GPAT1_ARATH2.181e-5858.89Glycerol-3-phosphate acyltransferase 1 OS=Arabidop... [more]
GPAT2_ARATH1.915e-4650.80Probable glycerol-3-phosphate acyltransferase 2 OS... [more]
GPAT3_ARATH7.278e-4653.30Probable glycerol-3-phosphate acyltransferase 3 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02020B09SK IF1 Citrus clementina cDNA clone C02020B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290070 ID=CX290070; Name=CX290070; organism=Citrus clementina; type=EST; length=665bp
GCACTGTTTTAGACCCTGTGGTCACAGCCGTTGCCCTAGGACGAAAAATT
AGTTGTGTCACATATAGTATTAGCAAGTTCACTGAAATAATTTCACCCAT
TAAAGCTGTTGCCTTGTCAAGGGAAAGAGAGAAAGATGCAGCTCACATCA
AGCAATTGCTTGAAGAAGGTGACTTGGTGATCTGCCCCGAGGGAACAACC
TGCAGGGAGCCTTTTCTTTTACGATTCAGTGCACTTTTTGCTGAGCTTAC
AGATAGAATTGTGCCGGTTGCTATCAACACTAAGCAAACTGTGTTTCATG
GTACCACAGTACGTGGGCACAAATTGTTGGATCCTTACTATGTGTTCATG
AATCCAAGGCCAACTTATGAGATCACATTCTTGAATCAGCTGCCGCCGGA
GCTGACAGTGAAAGGCGGCAAATCAGCCATCGAAGTTGCTAATTACATTC
AAAGGGTGCTTGCTGGTACATTAGGGTTTGAGTGCACCAATTTGACGAGG
AAAGATAAGTACTCCATTCTCGCAGGTACTGATGGCCGCGTTCCATCGAA
GAAGGAAAAGGAAAAGGAAAAGGAAAAGGCTTAAGATTCAAGAGATGGAA
GATTGAAACGGAAAAGCTTATGATTAATTTAAGCTCTATTGTTTTTCATA
TGTTTTAAACTTTAT
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