CX290071

Overview
NameCX290071
Unique NameCX290071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig201 contig Ccv1_Contig201:1..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290071 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27
Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  127 RPSANAKQSDLWLPLANQGWR-SCAQSANNPSLPQKSQGYIQVFLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFMDIYDVDHFINVLKDDISIVKELPNEFSWSTREYYXXXXXXXXXXXXPVHASANWYLENVLPVLQSYGVAAISPFSHRLTFDNLPMDIQRLRC 663
            RPS      +LW    + GWR S A  ++ P   +++ GY++V  +GGLNQQR  IC+AV   +I+NATLV+P L+ N  W D S F  IYDV+HFI  LK D+ IV ++P+       +              P  A   WYL   L  ++ +    ++PFSHRL  +    + QRLRC
Sbjct:   53 RPS-KINVEELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-----VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRC 226          
The following BLAST results are available for this feature:
BLAST of CX290071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH4.436e-2737.78DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC02020B10SK IF1 Citrus clementina cDNA clone C02020B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290071 ID=CX290071; Name=CX290071; organism=Citrus clementina; type=EST; length=665bp
ATGTTCTCGGAATGGAATGGTCCAAAACCTAGGCACCTGCCTCTGCTCAA
GAGTGCTTTGCAACACCAGAAAGAACCAAATGCTCCTAAGCCTAGGCACT
TACCTCTGTTCAAGAGTGCTTTACAGCGCCCAAGTGCAAATGCCAAGCAG
TCTGATCTCTGGCTACCTTTGGCCAACCAAGGATGGAGATCATGTGCTCA
ATCTGCAAATAATCCTTCATTACCTCAGAAATCTCAAGGATACATTCAGG
TATTTCTTGATGGAGGGTTAAACCAGCAGAGAATGGGGATATGTGATGCA
GTTGCTGTTACAAAAATTCTGAATGCAACACTTGTGATCCCATATCTTGA
AGTAAATCCTGTTTGGCAGGATTCAAGTTCCTTCATGGATATATATGATG
TCGATCACTTTATTAATGTATTAAAAGATGATATTTCTATTGTCAAAGAA
CTTCCTAATGAGTTTTCTTGGAGCACAAGGGAGTATTATGCCACTGCTAT
TCGTGCCACCAGAATCAAGACAGCACCAGTTCATGCTTCAGCTAACTGGT
ACCTAGAGAATGTCTTGCCTGTACTCCAGAGTTATGGGGTTGCTGCAATT
TCCCCATTCTCTCACCGTCTGACGTTTGACAACTTGCCGATGGACATTCA
ACGATTACGTTGTAA
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