CX290073

Overview
NameCX290073
Unique NameCX290073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10126 contig Ccv1_Contig10126:2..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 227
            MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A+ E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 9.554e-24
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 227
            MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A  E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_RAT (60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 206
            MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 206
            MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_MOUSE (60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 206
            MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 206
            MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 206
            MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 206
            MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_DROME (60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGES 215
            MAKSKNHT HNQ+ KAH+NGIK+P + RH ST GMD KFL NQRYARK N    ES
Sbjct:    1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREES 56          
BLAST of CX290073 vs. ExPASy Swiss-Prot
Match: RL29_YEAST (60S ribosomal protein L29 OS=Saccharomyces cerevisiae GN=RPL29 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.608e-13
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   48 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 185
            MAKSKNHTAHNQ+ KAH+NGIKKPK +++ S KG+DPKF RN ++A
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46          
The following BLAST results are available for this feature:
BLAST of CX290073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL291_ARATH5.601e-2481.6760S ribosomal protein L29-1 OS=Arabidopsis thalian... [more]
RL292_ARATH9.554e-2481.6760S ribosomal protein L29-2 OS=Arabidopsis thalian... [more]
RL29_RAT2.977e-1771.7060S ribosomal protein L29 OS=Rattus norvegicus GN=... [more]
RL29_PIG2.977e-1771.7060S ribosomal protein L29 OS=Sus scrofa GN=RPL29 P... [more]
RL29_MOUSE2.977e-1771.7060S ribosomal protein L29 OS=Mus musculus GN=Rpl29... [more]
RL29_MACFA2.977e-1771.7060S ribosomal protein L29 OS=Macaca fascicularis G... [more]
RL29_HUMAN2.977e-1771.7060S ribosomal protein L29 OS=Homo sapiens GN=RPL29... [more]
RL29_BOVIN2.977e-1771.7060S ribosomal protein L29 OS=Bos taurus GN=RPL29 P... [more]
RL29_DROME4.752e-1569.6460S ribosomal protein L29 OS=Drosophila melanogast... [more]
RL29_YEAST2.608e-1369.5760S ribosomal protein L29 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC02020B12SK IF1 Citrus clementina cDNA clone C02020B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290073 ID=CX290073; Name=CX290073; organism=Citrus clementina; type=EST; length=452bp
AAAATCTCTAGCACAGCCGCGAGCAGGGGTCTTTTCCTGAAAACGAGATG
GCAAAGTCAAAGAATCACACAGCGCATAACCAGTCTTACAAGGCTCACAA
GAACGGTATCAAGAAACCTAAGAAGCACCGCCACACTTCCACCAAAGGGA
TGGACCCAAAGTTCCTTAGGAACCAGAGGTATGCAAGGAAGCATAACAAG
CAAGGAGGTGAATCTGCTGCCGAGGAGTAGATGCTGTTATGGGGTTTTAA
TTACTTAGTTGTTAAGATTTTTTTTACCCCTTGAATGGATATCTGTTTTG
TTTTTGTTATTGTAGTGATTTGATGGCACTCTAGTGGGTTTCATTTCAAT
TTCAAGTATCTGCTGAATCGTTAAGCTATGTTTGTTTACTGATGTGATAA
TTGCTAAAGATTATTAAACTTTGNAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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