CX290128

Overview
NameCX290128
Unique NameCX290128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig262 contig Ccv1_Contig262:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 330.487 bits (846), Expect = 5.993e-90
Identity = 162/194 (83.51%), Postives = 181/194 (93.30%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 658
            MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKID+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNFLGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKS I+ EE
Sbjct:    1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.335e-89
Identity = 166/194 (85.57%), Postives = 181/194 (93.30%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 658
            MKTILSSETM+IPDGV +K+NAKVIEVEGPRGKL RDFKHLNLDF L+TDE  GK+KLKIDAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N+NK+IEIRNFLGEKKVRKVD+LDGV++IRS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  ++ EE
Sbjct:    1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDEN-GKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.518e-88
Identity = 159/194 (81.96%), Postives = 178/194 (91.75%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 658
            MKTILSSETMDIPDGV +K+NAKVIEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKID+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI  NNK+IEIRNFLGEKKVRKV+MLDGV ++RS+KVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  I  EE
Sbjct:    1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 311.227 bits (796), Expect = 3.762e-84
Identity = 155/190 (81.58%), Postives = 175/190 (92.11%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            MKTIL+SETM+IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+     G RKL++DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNFLGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+K TI
Sbjct:    1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.760e-57
Identity = 113/194 (58.25%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 658
            MKTILS++T+DIPD V V +  + + V+GPRG L R+F H+NL+  L+  ++   +KL++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +R+V M  GV    S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T++  E
Sbjct:    1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.921e-57
Identity = 110/190 (57.89%), Postives = 140/190 (73.68%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            MKTILS++T+DIP+ V++ +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.120e-57
Identity = 111/190 (58.42%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A IRT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.120e-57
Identity = 110/190 (57.89%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.688e-57
Identity = 110/190 (57.89%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX290128 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.688e-57
Identity = 110/190 (57.89%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   77 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 646
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
The following BLAST results are available for this feature:
BLAST of CX290128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL91_ARATH5.993e-9083.5160S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_PEA1.335e-8985.5760S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL92_ARATH2.518e-8881.9660S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_ORYSJ3.762e-8481.5860S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL9_ICTPU1.760e-5758.2560S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_MOUSE3.921e-5757.8960S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA5.120e-5758.4260S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_BOVIN5.120e-5757.8960S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_RAT6.688e-5757.8960S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_HUMAN6.688e-5757.8960S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionC02020G07SK IF1 Citrus clementina cDNA clone C02020G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290128 ID=CX290128; Name=CX290128; organism=Citrus clementina; type=EST; length=749bp
GGAATTCGGCACGAGGGGCAGCTCTAGCTTAAGCGTAGGAGGAGAAGAAG
AAGGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAG
ACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTAT
TGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGA
ACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTT
AAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAAC
TGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATC
GCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATC
GGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAA
GGTTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATA
AGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCT
CGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACAT
TAGGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTG
GAGAAGAATGATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATG
AATTTTTTTTTAATCTTTTTAATTTGCCTCTTACTTTGAGTTGAGGACA
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