CX290129

Overview
NameCX290129
Unique NameCX290129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1436..1898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: ASO_CUCPM (L-ascorbate oxidase OS=Cucurbita pepo var. melopepo PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.668e-42
Identity = 76/112 (67.86%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   20 NLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFMNPKQN 355
            NLSETHPWHLHGHDFWVLG G+GKF+ E+E            T VIFPYGWTA+RFVADNPG WAFHCHIEPH H+GMGVV A GVE VG IP +ALACG T K  +N  +N
Sbjct:  440 NLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACGGTAKSLINNPKN 551          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: ASO_CUCMA (L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 8.276e-42
Identity = 75/108 (69.44%), Postives = 81/108 (75.00%), Query Frame = 2
Query:   20 NLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFMN 343
            NLSE HPWHLHGHDFWVLG G+GKFT E+E            T VIFPYGWTA+RFVADNPG WAFHCHIEPH H+GMGVV A GVE VG IP +ALACG T K  +N
Sbjct:  470 NLSEIHPWHLHGHDFWVLGYGDGKFTAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACGGTAKSLIN 577          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: ASO_TOBAC (L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.145e-41
Identity = 74/117 (63.25%), Postives = 85/117 (72.65%), Query Frame = 2
Query:    5 SARGPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFMNPKQN 355
            +A   ++SE HPWHLHGHDFWVLG GEGKF+++D             TAVIFP+GWTALRFV DNPG WAFHCHIEPH H+GMGV+ A GV  V  IP +ALACGLTGK  M+ K N
Sbjct:  462 NALAKDVSEIHPWHLHGHDFWVLGYGEGKFSEKDVKKFNLKNPPLRNTAVIFPFGWTALRFVTDNPGVWAFHCHIEPHLHMGMGVIFAEGVHLVKKIPKEALACGLTGKMLMSNKHN 578          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: ASO_CUCSA (L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.844e-39
Identity = 73/104 (70.19%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   17 PNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLT 325
            PN+SE HPWHLHGHDFWVLG GEGKF   EDE            T VIFPYGWTA+RFVADNPG WAFHCHIEPH H+GMGVV A GV  VG IP +ALACG T
Sbjct:  474 PNMSEIHPWHLHGHDFWVLGYGEGKFYAPEDEKKLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVHMVGMIPPKALACGST 577          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC7_ORYSJ (Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 271
            SE HP HLHG +F+VL +G G FT  +             T  +   GW  +RFVA+NPG W FHCH++ H  +G+G+V A+
Sbjct:  458 SENHPIHLHGFNFFVLAQGLGNFTPGNVSGYNLVDPVSRNTLAVPTGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFAV 539          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC16_ARATH (Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.603e-15
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   23 LSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            LS+ HP+HLHG +F+ +GRG G F  E +              V  P G WTA+RF+ADNPG W  HCH+E   H   G+ +A  V+  G+ P+Q+L
Sbjct:  463 LSDNHPFHLHGFNFFEVGRGLGNFNPEKDPKAFNLVDPVERNTVGVPAGGWTAIRFIADNPGVWFMHCHLE--LHTTWGLKMAFVVDN-GHGPDQSL 556          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC11_ORYSJ (Putative laccase-11 OS=Oryza sativa subsp. japonica GN=LAC11 PE=5 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.921e-14
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            +E+HP HLHG+DF+V+G G G +   ++              +  P  GW A+RFVADNPG W  HCH++ H   G+ +   +     G +PNQ L
Sbjct:  437 AESHPLHLHGYDFYVVGTGFGNYDASNDTAKYNLVDPVQRNTISVPTAGWVAIRFVADNPGVWIMHCHLDVHLSWGLSMAWLV---NDGPLPNQKL 529          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 262
            E HP HLHG+ F+V+G G G F  + D             T    P GW A+RFVADNPGAW  HCHI+ H   G+ +V
Sbjct:  469 ENHPMHLHGYQFYVVGSGFGNFNPRTDPARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAMV 547          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC2_ARATH (Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   29 ETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 310
            E HP HLHG +F+V+G+G G F    +              +  P G W A+RF+ADNPG W  HCHIE   H+  G+ +A  V   G++PNQ L
Sbjct:  472 EAHPIHLHGFNFYVVGQGFGNFNPARDPKHYNLVDPVERNTINIPSGGWVAIRFLADNPGVWLMHCHIE--IHLSWGLTMA-WVVLDGDLPNQKL 563          
BLAST of CX290129 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 37/80 (46.25%), Postives = 45/80 (56.25%), Query Frame = 2
Query:   26 SETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 262
            S  HP HLHG++F+V+G G G F +  +            T V  P  GWTA+RFVA+NPG W  HCHIE H   GM  V
Sbjct:  467 SNIHPIHLHGYNFYVVGSGFGNFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTV 546          
The following BLAST results are available for this feature:
BLAST of CX290129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ASO_CUCPM1.668e-4267.86L-ascorbate oxidase OS=Cucurbita pepo var. melopep... [more]
ASO_CUCMA8.276e-4269.44L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=... [more]
ASO_TOBAC3.145e-4163.25L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE... [more]
ASO_CUCSA3.844e-3970.19L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1[more]
LAC7_ORYSJ5.056e-1542.68Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 ... [more]
LAC16_ARATH6.603e-1542.27Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 S... [more]
LAC11_ORYSJ1.921e-1437.50Putative laccase-11 OS=Oryza sativa subsp. japonic... [more]
LAC3_ARATH4.280e-1445.57Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
LAC2_ARATH4.280e-1441.05Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=... [more]
LAC14_ARATH4.280e-1446.25Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC02020G08SK IF1 Citrus clementina cDNA clone C02020G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290129 ID=CX290129; Name=CX290129; organism=Citrus clementina; type=EST; length=463bp
GAATTCGGCACGAGGGCCAAACTTGAGTGAAACCCACCCTTGGCATTTGC
ATGGGCATGATTTTTGGGTATTAGGGCGCGGAGAAGGGAAGTTTACGAAA
GAAGATGAGAAGAAATTTAACTTGAAGAATCCACCATTGAAAAATACTGC
GGTGATATTCCCATATGGCTGGACTGCTTTAAGATTTGTTGCTGATAATC
CAGGTGCTTGGGCATTTCACTGCCATATTGAGCCCCATTTCCATATTGGA
ATGGGTGTGGTTCTTGCTCTTGGTGTTGAAACCGTTGGTAATATTCCAAA
CCAGGCGTTGGCTTGTGGTTTGACTGGGAAAAGGTTCATGAACCCTAAAC
AAAATTGAGGCTAGCTAGTTTGTTTTATGTACTTTATTCCTGGAGTTTCT
ATTGTTGTTTTGATATTTATATTAATAAAATTTCGGAGTTGAATAAAAAA
AAAAAAAAAAAAA
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