CX290131

Overview
NameCX290131
Unique NameCX290131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig263 contig Ccv1_Contig263:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290131 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.122e-61
Identity = 116/154 (75.32%), Postives = 129/154 (83.77%), Query Frame = 1
Query:  223 LYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIENVVFT 684
            LYSA  FDLT +NVDLVLEDVRP+LI+DGGN+            KLQGAC SCPSS+TTM+MGIERVLKEKFGDA+KDIRQV+DEEV++ TVEAVN HLDILRPAIKNYGGSVEVLSVE  DC+VKYVGP+SI  GI+AAIKEKF DI NV FT
Sbjct:   77 LYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFT 230          
BLAST of CX290131 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  247 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAI----KEKFPDIENV 675
            LT +NV+ VL+++RPYL++DGGN+            KLQGACGSCPSST TM MGIER L EK  + +  +  + DEE   E   E +   L+ +RP  I    GS++++ +E     ++  GP +    +R A+    +EK P I  V
Sbjct:   85 LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAV 232          
BLAST of CX290131 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  229 SAHQFDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRPAIKNY-GGSVEVLSVESGDCIVKYVGPDSIASGIRAAI----KEKFPDIENV 675
            +A Q  LTA NV+ VL+ VRPYL ADGG++            KLQGACGSCPSS  T+  GIER L EK  D +  +  V D+E   E   E V   L+ +RP +    GG ++ L ++     V+  GP ++   +R A+    +EK P I+ V
Sbjct:   69 TAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPD-VAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIV 222          
BLAST of CX290131 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  247 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV--RETTVEAVNGHLDILRPAIKNY-GGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEK 654
            LT +NV+ VL++VRP L+ADGGN+            KLQGACGSCPSS+ T+ MGIE  L++K  + I  + Q  + E    E   E +   L  LRP +    GG +E++ ++     V+  GP +    +R A+ +K
Sbjct:   84 LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQK 221          
The following BLAST results are available for this feature:
BLAST of CX290131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NIFU1_ARATH9.122e-6175.32NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU2_ARATH5.064e-1938.93NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ1.473e-1839.35NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH2.352e-1637.41NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC02020G10SK IF1 Citrus clementina cDNA clone C02020G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290131 ID=CX290131; Name=CX290131; organism=Citrus clementina; type=EST; length=710bp
CGAGGAAGCCGCAAAAGAATGGCGTGTCTAAGCCTAACAGCAGCCACCAG
AATATCAAAGACGCCGACGATCTCTTCAAAAAGCCAATTCCCAACAAAGT
TCAATGAACGCTTACAATTCATATCAATTAAACCAAAAAATTCAGTCTTG
CAAAAAAGCGGATCGCATGAAACAGCGATACGAGCTTCGAACCCAAGCGC
GCCCGCTGGCTCATCACCTGGCCTCTACTCCGCCCACCAGTTCGACCTCA
CGGCTAAAAACGTCGACCTTGTTCTCGAAGACGTGCGGCCTTATTTGATC
GCCGATGGAGGAAACATCGACGTTGTTTCCGTTGAAGACGGCGTCGTCTC
TGTCAAGCTCCAAGGAGCATGTGGCAGCTGCCCGAGCTCAACAACAACCA
TGTCGATGGGAATTGAGAGAGTATTGAAGGAAAAATTTGGAGATGCAATC
AAGGATATCCGCCAAGTGTATGATGAAGAAGTAAGAGAGACCACAGTTGA
GGCAGTAAATGGTCACCTTGATATACTGAGACCTGCCATTAAGAATTATG
GTGGAAGCGTGGAAGTGTTATCTGTTGAGAGTGGGGATTGCATTGTAAAG
TATGTGGGGCCTGATTCCATTGCATCGGGCATTAGAGCAGCCATCAAAGA
GAAGTTCCCAGATATTGAGAATGTTGTCTTCACTGACTAGGTTGCTCTTA
GTATCATAGA
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