CX290137

Overview
NameCX290137
Unique NameCX290137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3442 contig Ccv1_Contig3442:166..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290137 vs. ExPASy Swiss-Prot
Match: Y4141_ARATH (Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.490e-58
Identity = 98/133 (73.68%), Postives = 109/133 (81.95%), Query Frame = 3 
Query:    9 VDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNE 407
            +DLWYDW NGRNFNIIQ QLG +TYDLEW+NGTS+ YTLD +K CR     VGILRP+WLDGA+YLGQ+ V  FLCNVW KVDFIWYYEDV TKRPV W FYTG  A ++T+EVGAVLED KWQAPVYCF  E
Sbjct:   52 IDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSFFYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKRPVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184
The following BLAST results are available for this feature:
BLAST of CX290137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4141_ARATH8.490e-5873.68Uncharacterized protein At4g14100 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02020H04SK IF1 Citrus clementina cDNA clone C02020H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290137 ID=CX290137; Name=CX290137; organism=Citrus clementina; type=EST; length=588bp
GGCAGAAAGTGGACCTCTGGTACGACTGGCCCAACGGCCGCAACTTCAAC
ATAATCCAGAACCAGCTCGGCAAGCTCACGTATGATCTTGAATGGGACAA
CGGCACCTCTTACATTTACACTCTGGACGCCAACAAGGAATGCAGAGTCT
TGCATTTCCCCGTCGGCATCCTCCGCCCCAGTTGGCTCGACGGCGCTGAG
TATCTTGGCCAGAAGTACGTGGACAAGTTTCTTTGTAATGTGTGGACCAA
AGTTGATTTCATTTGGTACTACGAAGATGTCGTCACTAAGAGACCTGTTC
ATTGGGCCTTCTACACAGGGTACACAGCTGATGTGATAACATTCGAAGTG
GGAGCAGTTCTCGAGGATCCCAAATGGCAGGCTCCTGTTTATTGTTTTGG
GAATGAGGGGGAGGAAAGGCCGTTGCTTAATTCTGTGGTTACTGATTCTT
CTTCTGGGAAATTGATTAGAGAGGTTTTCTCTACTTTCTAGCTCCTCTCT
ATGAGGGTGTGATTGTAATTATTATCCATCTTCATCTGTTGCTTCATCTT
CATTTTCTCTCAGTTTTTAATAAATTTTCTGAGTTTTA
back to top