CX290146

Overview
NameCX290146
Unique NameCX290146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.373e-30
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = -1
Query:   58 SLYGLKQSPRAWFTRFSPTLTRLKYIQGQADHTIFVKKGENGKKXXXXXXXXXXXLTGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEG--IFISQRKYTLNLLEETGKLGCKPVGTPLEKNWK 447
            SLYGLKQ+PR W+ +F   +    Y++  +D  ++ K+                 + G D   I KLK  L + F++KDLGP +  LGM++ R +    +++SQ KY   +LE       KPV TPL  + K
Sbjct:  959 SLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLK 1090          

HSP 2 Score: 72.4034 bits (176), Expect = 1.373e-30
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  486 QTYGIDYEETFAPVAKLNSIRVLLSLVVNLDWELH*LDVKNAFLNGTLNEEVYMKIPPGFQ 668
            Q  GID++E F+PV K+ SIR +LSL  +LD E+  LDVK AFL+G L EE+YM+ P GF+
Sbjct:  885 QKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFE 945          
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 6.682e-30
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  474 TQTYGIDYEETFAPVAKLNSIRVLLSLVVNLDWELH*LDVKNAFLNGTLNEEVYMKIPPGFQSEKE 671
            TQ Y IDYEETFAPVA+++S R +LSLV+  + ++H +DVK AFLNGTL EE+YM++P G     +
Sbjct:  964 TQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD 1029          

HSP 2 Score: 69.3218 bits (168), Expect = 6.682e-30
Identity = 34/126 (26.98%), Postives = 59/126 (46.83%), Query Frame = -1
Query:   73 SLYGLKQSPRAWFTRFSPTLTRLKYIQGQADHTIFV-KKGENGKKXXXXXXXXXXXLTGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEGIFISQRKYTLNLLEETGKLGCKPVGTPL 447
            ++YGLKQ+ R WF  F   L   +++    D  I++  KG   +            +   D   ++  K  L E+F + DL  +K+F+G+ +   ++ I++SQ  Y   +L +     C  V TPL
Sbjct: 1037 AIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL 1162          
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 1.253e-11
Identity = 37/150 (24.67%), Postives = 68/150 (45.33%), Query Frame = -1
Query:    1 LYGLKQSPRAWFTRFSPTLTRLKYIQGQADHTIFVKKGENGKKXXXXXXXXXXXLTGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEG-IFISQRKYTLNLLEETGKLGCKPVGTPLEKNWKSKIKDNEPSV-DVGRYQRLV 444
            +YGLKQ+P  W    + TL ++ + + + +H ++ +   +G                   +   ++K +L + + +KDLG +  FLG+ + +S  G I +S + Y      E+     K   TPL  N K   +   P + D+  YQ +V
Sbjct:   40 MYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKI-YDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPL-CNSKPLFETTSPHLKDITPYQSIV 187          

HSP 2 Score: 40.0466 bits (92), Expect = 1.253e-11
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = -2
Query:  468 LDVKNAFLNGTLNEEVYMKIPPGFQSEKERD 560
            +DV  AFLN T++E +Y+K PPGF +E+  D
Sbjct:    1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPD 31          
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = -1
Query:   49 TGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEGIFISQRKYTLNLLEETGKLGCKPVGTPLEKNWKSKI 279
            TG  N  ++ L  QL   F +KDLGP+ YFLG+++     G+F+SQ KY   +L   G L CKP+ TPL     S +
Sbjct:   13 TGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSV 89          
The following BLAST results are available for this feature:
BLAST of CX290146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
POLX_TOBAC1.373e-3033.33Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME6.682e-3056.06Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
YCH4_YEAST1.253e-1124.67Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
M810_ARATH1.688e-1141.56Uncharacterized mitochondrial protein AtMg00810 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02021A04SK IF1 Citrus clementina cDNA clone C02021A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290146 ID=CX290146; Name=CX290146; organism=Citrus clementina; type=EST; length=696bp
AACCAGGCGTTGGTATCTTCCTACATCCACTGAAGGCTCATTATCTTTAA
TCTTGCTTTTCCAATTCTTCTCGAGTGGAGTTCCTACTGGTTTGCACCCC
AACTTCCCTGTTTCTTCTAGTAAGTTAAGAGTGTATTTTCTCTGAGAAAT
GAAAATACCCTCTTTACTTCTAGCAACCTCCATACCGAGGAAATATTTTA
GAGGTCCTAGGTCTTTAACTTCAAATTCTTCCTTCAGTTGATTCTTGAGC
TTGTGAATCTCAACATTATCATCACCTGTAAGTATGATGTCATCTACGTA
TACAATAAGAATGACCTTTTTTCCATTTTCTCCTTTCTTAACGAAGATAG
TGTGATCAGCCTGCCCTTGAATGTACTTTAGCCGAGTGAGAGTTGGGCTA
AATCTGGTGAACCATGCACGTGGGGATTGTTTCAAACCATATAATGATTT
TTTCAATTTGCGAATTTATCTCGTTCTTTTTCAGACTGAAATCCTGGTGG
AATCTTCATATACACTTCTTCATTAAGAGTTCCATTCAAGAAAGCATTCT
TCACATCGAGTTAGTGTAGTTCCCAGTCTAGATTAACTACCAAGGACAAG
AGGACCCGAATAGAGTTGAGTTTGGCCACTGGAGCAAATGTTTCTTCATA
ATCAATCCCATATGTTTGTGTTAGGGGTGGGCAATTTCGGATTTGG
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