CX290146
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.373e-30 Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = -1 Query: 58 SLYGLKQSPRAWFTRFSPTLTRLKYIQGQADHTIFVKKGENGKKXXXXXXXXXXXLTGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEG--IFISQRKYTLNLLEETGKLGCKPVGTPLEKNWK 447 SLYGLKQ+PR W+ +F + Y++ +D ++ K+ + G D I KLK L + F++KDLGP + LGM++ R + +++SQ KY +LE KPV TPL + K Sbjct: 959 SLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLK 1090 HSP 2 Score: 72.4034 bits (176), Expect = 1.373e-30 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -2 Query: 486 QTYGIDYEETFAPVAKLNSIRVLLSLVVNLDWELH*LDVKNAFLNGTLNEEVYMKIPPGFQ 668 Q GID++E F+PV K+ SIR +LSL +LD E+ LDVK AFL+G L EE+YM+ P GF+ Sbjct: 885 QKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFE 945
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 6.682e-30 Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2 Query: 474 TQTYGIDYEETFAPVAKLNSIRVLLSLVVNLDWELH*LDVKNAFLNGTLNEEVYMKIPPGFQSEKE 671 TQ Y IDYEETFAPVA+++S R +LSLV+ + ++H +DVK AFLNGTL EE+YM++P G + Sbjct: 964 TQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD 1029 HSP 2 Score: 69.3218 bits (168), Expect = 6.682e-30 Identity = 34/126 (26.98%), Postives = 59/126 (46.83%), Query Frame = -1 Query: 73 SLYGLKQSPRAWFTRFSPTLTRLKYIQGQADHTIFV-KKGENGKKXXXXXXXXXXXLTGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEGIFISQRKYTLNLLEETGKLGCKPVGTPL 447 ++YGLKQ+ R WF F L +++ D I++ KG + + D ++ K L E+F + DL +K+F+G+ + ++ I++SQ Y +L + C V TPL Sbjct: 1037 AIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL 1162
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2) HSP 1 Score: 50.447 bits (119), Expect = 1.253e-11 Identity = 37/150 (24.67%), Postives = 68/150 (45.33%), Query Frame = -1 Query: 1 LYGLKQSPRAWFTRFSPTLTRLKYIQGQADHTIFVKKGENGKKXXXXXXXXXXXLTGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEG-IFISQRKYTLNLLEETGKLGCKPVGTPLEKNWKSKIKDNEPSV-DVGRYQRLV 444 +YGLKQ+P W + TL ++ + + + +H ++ + +G + ++K +L + + +KDLG + FLG+ + +S G I +S + Y E+ K TPL N K + P + D+ YQ +V Sbjct: 40 MYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKI-YDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPL-CNSKPLFETTSPHLKDITPYQSIV 187 HSP 2 Score: 40.0466 bits (92), Expect = 1.253e-11 Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = -2 Query: 468 LDVKNAFLNGTLNEEVYMKIPPGFQSEKERD 560 +DV AFLN T++E +Y+K PPGF +E+ D Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPD 31
BLAST of CX290146 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11 Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = -1 Query: 49 TGDDNVEIHKLKNQLKEEFEVKDLGPLKYFLGMEVARSKEGIFISQRKYTLNLLEETGKLGCKPVGTPLEKNWKSKI 279 TG N ++ L QL F +KDLGP+ YFLG+++ G+F+SQ KY +L G L CKP+ TPL S + Sbjct: 13 TGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSV 89 The following BLAST results are available for this feature:
BLAST of CX290146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290146 ID=CX290146; Name=CX290146; organism=Citrus clementina; type=EST; length=696bpback to top |