CX290234

Overview
NameCX290234
Unique NameCX290234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig274 contig Ccv1_Contig274:1..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_MOUSE (Protein phosphatase methylesterase 1 OS=Mus musculus GN=Ppme1 PE=1 SV=5)

HSP 1 Score: 191.815 bits (486), Expect = 1.996e-48
Identity = 107/227 (47.14%), Postives = 137/227 (60.35%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKY-------------------------------------DD--SKK--CYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            VA+DLRGHG++  +N  DLS ETM  DV  V++ MYG+ PP ++L+GHSMGG++AVH AA   + SL GL ++DVVEGTAM +L  MQ  L  R + F S+E AIEWSVK G +RNL+SAR+S+   +K                                      DD  +KK   Y +R  L +TE+YW  W+ GLS  FLSCP+PKLLLLAG DRLD+ LT GQ
Sbjct:  108 VALDLRGHGETKVKNSEDLSAETMAKDVGNVVEAMYGDLPPPVMLIGHSMGGAIAVHTAAANLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEGIIEEEEEDEEGSESVNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQ 334          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_BOVIN (Protein phosphatase methylesterase 1 OS=Bos taurus GN=PPME1 PE=2 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 3.405e-48
Identity = 107/227 (47.14%), Postives = 136/227 (59.91%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKY-------------------------------------DD--SKK--CYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            VA+DLRGHG++   N  DLS ETM  DV  V++ MYG+ PP I+L+GHSMGG++AVH A+   + SL GL ++DVVEGTAM +L  MQ  L  R + F S+E AIEWSVK G +RNL+SAR+S+   +K                                      DD  +KK   Y +R  L +TE+YW  W+ GLS  FLSCP+PKLLLLAG DRLD+ LT GQ
Sbjct:  108 VALDLRGHGETKVRNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEGIIEEEEEDEEGSESVNKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQ 334          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_HUMAN (Protein phosphatase methylesterase 1 OS=Homo sapiens GN=PPME1 PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 1.690e-47
Identity = 107/227 (47.14%), Postives = 135/227 (59.47%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARL-------------------------------------SIPSTLKYDD--SKK--CYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            VA+DLR HG++  +N  DLS ETM  DV  V++ MYG+ PP I+L+GHSMGG++AVH A+   + SL GL ++DVVEGTAM +L  MQ  L  R + F S+E AIEWSVK G +RNL+SAR+                                     SI    K DD  +KK   Y +R  L +TE+YW  W+ GLS  FLSCP+PKLLLLAG DRLD+ LT GQ
Sbjct:  108 VALDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQ 334          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_PONAB (Protein phosphatase methylesterase 1 OS=Pongo abelii GN=PPME1 PE=2 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 1.095e-46
Identity = 106/227 (46.70%), Postives = 134/227 (59.03%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARL-------------------------------------SIPSTLKYDD--SKK--CYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            VA+DLR HG++  +N  DLS ETM  DV  V++ MYG+ PP I+L+GHSMGG++AVH A+   + SL GL ++ VVEGTAM +L  MQ  L  R + F S+E AIEWSVK G +RNL+SAR+                                     SI    K DD  +KK   Y +R  L +TE+YW  W+ GLS  FLSCP+PKLLLLAG DRLD+ LT GQ
Sbjct:  108 VALDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIGVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQ 334          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_CAEEL (Probable protein phosphatase methylesterase 1 OS=Caenorhabditis elegans GN=B0464.9 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.284e-44
Identity = 91/187 (48.66%), Postives = 126/187 (67.38%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRS-LHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYDDSKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            VA DLRGHG +   ++ DLS ET   D+ A+ K ++GE    + +VGHSMGG++A+H    K + S +  L+V+DVVEG+AM +L  M   L +R   F SIEKAI W +  G+ RN  +AR+S+PS ++ + S+  Y +R  L  TEQYW+ W+EGLS++FL C VPK+L+LAG DRLDR LT GQ
Sbjct:  116 VAPDLRGHGDTKCSDEHDLSKETQIKDIGAIFKNIFGEDDSPVCIVGHSMGGALAIHTLNAKMISSKVAALIVIDVVEGSAMEALGGMVHFLHSRPSSFPSIEKAIHWCLSSGTARNPTAARVSMPSQIR-EVSEHEYTWRIDLTTTEQYWKGWFEGLSKEFLGCSVPKMLVLAGVDRLDRDLTIGQ 301          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_SCHPO (Protein phosphatase methylesterase 1 OS=Schizosaccharomyces pombe GN=ppe1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.704e-37
Identity = 82/189 (43.39%), Postives = 124/189 (65.61%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCND---VLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYDDSKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            +A+DLR HG+++ E + D+S+ET+  D    ++ ++ M+ E    I+LVGHS+GG++  + A +KT+ +  GLVV+DVVEGTAM +L  M+  LS R   F SI+ AI W +K    RN  SA +++PS L   +    +V+R  L +T  YW  W++GLS+KFL  P  ++L++AGTDRLD+ LT GQ
Sbjct:  103 LALDLRAHGETTLEPESDMSLETLSKDFTHAVSYVQRMF-ELDEKIILVGHSLGGAICAYCAFQKTIPNTSGLVVIDVVEGTAMEALGFMKTYLSNRPTSFKSIDDAISWHIKTLVTRNRLSACITVPSLLVQQED-GTFVWRTDLYKTSPYWMDWFKGLSDKFLRAPYGRMLIVAGTDRLDKTLTIGQ 289          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_YARLI (Protein phosphatase methylesterase 1 OS=Yarrowia lipolytica GN=PPE1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.289e-36
Identity = 82/189 (43.39%), Postives = 120/189 (63.49%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGE--QPPSIVLVGHSMGGSVAVHVAAKKTLRS-LHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYDDSKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            +A D RGHG +  E+  D S+E   ND   ++  +  E     +++LVGHS+GG+V  +    K ++  + GL V+DVVEGTA+ SL  MQ+IL++R + F ++EK IEW+V+  ++RN +SA +S+P TL          +R  L  T+ YW+ W+ GLSEKF+SC   KLL+LAGTDRLD+ L  GQ
Sbjct:  181 IAFDARGHGFTEVEST-DYSLEAFTNDFAFIVANVVAEFGLTNNLILVGHSLGGAVVTNACHLKLIQHPVIGLAVLDVVEGTAIESLASMQQILNSRPKSFPTVEKGIEWTVQSHTIRNRESACVSVPPTLISQHDGPGMTWRTDLMLTKPYWKGWFTGLSEKFISCAPAKLLILAGTDRLDKDLMVGQ 368          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_ASPOR (Protein phosphatase methylesterase 1 OS=Aspergillus oryzae GN=ppe1 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.938e-35
Identity = 88/202 (43.56%), Postives = 124/202 (61.39%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSEND-------IDLSIETMCNDVLAVLKE----MYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR-SLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYD----DSKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            +++D R HG++S+  +       +DLS+ET+  D++ +++E    M  E  P IVLVGHS+GG+V   VA K  L   +    V+DVVEG+AM +L  M+K LSTR   F S+   IEW  +  ++RN  SAR+S+PS L  +    D  K +V+R  L ET+ +W  W+ GLS+KFL     KLLLLAGTDRLD+ L  GQ
Sbjct:  148 LSIDARDHGQTSTYTETGEGKVELDLSLETLNRDLVFIVRETQSKMGWESLPDIVLVGHSLGGAVITDVAKKGELGPKVLAYAVLDVVEGSAMDALQSMEKYLSTRPTRFPSLASGIEWHTRSRTIRNRTSARVSVPSLLYEEAAPTDPSKPWVWRTNLAETKPFWENWFIGLSKKFLEARGGKLLLLAGTDRLDKELMIGQ 349          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_ASPFU (Protein phosphatase methylesterase 1 OS=Aspergillus fumigatus GN=ppe1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.317e-35
Identity = 86/201 (42.79%), Postives = 122/201 (60.70%), Query Frame = 1
Query:   16 VAMDLRGHGKSSSEN------DIDLSIETMCNDVLAVLK----EMYGEQPPSIVLVGHSMGGSVAVHVAAKKTL-RSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYD----DSKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            +++D R HG++S +       ++DLS+ET+  D++ V +    EM  E+ P +VLVGHS+GG+V   VA K  L   +    V+DVVEG+AM +L  M+K LSTR   F S+   +EW  +  ++RN  SAR+S+PS L  +    D  K +V+R  L  T+ +W  W+ GLS KFL     KLLLLAGTDRLD+ L  GQ
Sbjct:  139 LSLDARDHGRTSVQRTDGGAAELDLSLETLNQDLVYVARKTQAEMGWEELPDLVLVGHSLGGAVITDVAKKGELGNKVLAYAVLDVVEGSAMDALQSMEKYLSTRPSRFPSLTSGVEWHTRSRTIRNRASARVSVPSLLYKEETPSDPAKPWVWRTNLSATKPFWEDWFIGLSRKFLEARGGKLLLLAGTDRLDKELMIGQ 339          
BLAST of CX290234 vs. ExPASy Swiss-Prot
Match: PPME1_EMENI (Protein phosphatase methylesterase 1 OS=Emericella nidulans GN=ppe1 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 9.618e-35
Identity = 91/207 (43.96%), Postives = 121/207 (58.45%), Query Frame = 1
Query:   16 VAMDLRGHGKSS-------SEND-----IDLSIETMCNDVLAVLKE----MYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRS-LHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYDD----SKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTFGQ 573
            ++ D R HG +S        E D     +DLS++T+  D+L V++E    M  E  P IVLVGHS+GG+V   VA K  L   L    V+DVVEG+AM +L  M+  LSTR   F S+   IEW  +  ++RN  SAR+S+PS L ++D      K +V+R  L ET+ +W  W+ GLS KFL     KLLLLAGTDRLD+ L  GQ
Sbjct:  121 LSADARDHGSTSVKRASEDGEADPETARLDLSLDTLNQDLLFVIRETQAKMGWETLPDIVLVGHSLGGAVITDVAKKGELGGKLLAYAVLDVVEGSAMDALQSMETYLSTRPSRFPSLPSGIEWHTRSRTIRNRTSARVSVPSLLYHEDVPKDPSKPWVWRTNLAETKPFWEGWFVGLSRKFLEARGGKLLLLAGTDRLDKELMIGQ 327          
The following BLAST results are available for this feature:
BLAST of CX290234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PPME1_MOUSE1.996e-4847.14Protein phosphatase methylesterase 1 OS=Mus muscul... [more]
PPME1_BOVIN3.405e-4847.14Protein phosphatase methylesterase 1 OS=Bos taurus... [more]
PPME1_HUMAN1.690e-4747.14Protein phosphatase methylesterase 1 OS=Homo sapie... [more]
PPME1_PONAB1.095e-4646.70Protein phosphatase methylesterase 1 OS=Pongo abel... [more]
PPME1_CAEEL2.284e-4448.66Probable protein phosphatase methylesterase 1 OS=C... [more]
PPME1_SCHPO2.704e-3743.39Protein phosphatase methylesterase 1 OS=Schizosacc... [more]
PPME1_YARLI2.289e-3643.39Protein phosphatase methylesterase 1 OS=Yarrowia l... [more]
PPME1_ASPOR1.938e-3543.56Protein phosphatase methylesterase 1 OS=Aspergillu... [more]
PPME1_ASPFU4.317e-3542.79Protein phosphatase methylesterase 1 OS=Aspergillu... [more]
PPME1_EMENI9.618e-3543.96Protein phosphatase methylesterase 1 OS=Emericella... [more]

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Properties
Property NameValue
Genbank descriptionC02022A01SK IF1 Citrus clementina cDNA clone C02022A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290234 ID=CX290234; Name=CX290234; organism=Citrus clementina; type=EST; length=575bp
CGATTCGGCACGAGGGTTGCTATGGACCTGAGAGGACATGGAAAATCATC
CTCAGAAAATGATATTGACCTTTCTATTGAGACTATGTGCAATGATGTTT
TAGCTGTTTTAAAGGAAATGTATGGTGAACAACCTCCTTCAATTGTGCTT
GTTGGCCACAGCATGGGAGGTTCAGTTGCTGTGCATGTTGCTGCAAAGAA
GACATTACGATCATTGCATGGGCTGGTTGTTGTTGATGTTGTAGAGGGAA
CAGCTATGGCTTCATTGATTCATATGCAAAAAATTCTATCAACCAGAATG
CAGCATTTCTCAAGCATTGAAAAAGCGATTGAATGGAGTGTGAAAGGAGG
TTCTTTAAGAAATCTTGACTCTGCTCGTCTCTCTATCCCTTCAACATTAA
AGTATGATGATTCAAAGAAGTGTTATGTCTACCGAGCACGATTAGAAGAA
ACTGAACAATATTGGAGAGCCTGGTATGAAGGTCTTTCAGAGAAATTTCT
GTCATGTCCTGTCCCAAAGCTCTTGCTTCTAGCAGGAACAGACAGACTCG
ATAGACCTCTTACATTTGGGCAAAT
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