CX290242

Overview
NameCX290242
Unique NameCX290242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   10 TRVINNNPLVDNVQIIHQ--PQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            T  + NN   +   ++ Q   QM   EFPERP QPECSY+++TGDCK+K NCKYHHPKNR+PK PP  L+DKGLPLRP
Sbjct:  316 TTYLMNNSSAETSMLLSQYRHQMPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRP 393          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   25 NNPLVDNVQII-HQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVSS 246
            NN L +      +Q QM V EFPERP QPEC+Y+L+TGDCK+K  CKYHHPKNR+PK    + +DKGLPLRP  S
Sbjct:  310 NNSLAETSSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQS 384          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H13_ARATH (Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis thaliana GN=At1g48195 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
Query:   82 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            +FPERPG+PECSY+LRTG+C  K NCKYHHPKN  P  P CTL+DKGLPLRP
Sbjct:    5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRP 56          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERPG+PEC Y+L+TGDCK+ ++CK+HHP++R+P    C LS  GLPLRP
Sbjct:  286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRP 336          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERP QPEC ++++TGDCK+ + CK+HHPK RI  +P C LS  GLPLRP
Sbjct:  306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRP 356          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   79 GEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            GE+P+R GQPEC Y+L+TG CK+ + CK+HHP+ +   +    L+  G PLRP
Sbjct:   96 GEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRP 148          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERPGQPEC ++++TGDCK+ + CK+HHP++R    P C LS  GLPLRP
Sbjct:  240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRP 290          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   82 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            EFP+RP QPEC YF+RTGDCK+ S+C+YHHP + +P      LS  GLPLRP
Sbjct:  303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRP 354          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERPGQPEC ++++TGDCK+ + CK+HHP++R    P C LS  GLPLRP
Sbjct:  271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRP 321          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    4 FGTRVINNNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLR 234
            FG+    N+P  D   +I   +M  GE+PER GQPEC Y+L+TG CK+   CK+HHP+N+   +   +L+  G PLR
Sbjct:   57 FGSTCRFNHPR-DRELVIATARMR-GEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLR 131          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FPERP QPEC ++++TGDCK+ + CK+HHPK R+  +P C L+  GLPLRP
Sbjct:  315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRP 365          
BLAST of CX290242 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   85 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVSSDFQLC-FWMIYLLENDNLNC 303
            FPERP QPEC Y+++TGDCK+ + CK+HHP+ R   +P C LS  GLPLRP     +LC F+  Y +     NC
Sbjct:  329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGE---ELCKFYSRYGICKFGANC 399          

HSP 2 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 FGTRVINNNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 237
            FG     N+P   N+ I      + GE+PER GQPEC Y+L+TG CK+   CK+HHP+ +   +    L+  G PLRP
Sbjct:   97 FGMSCRFNHPQDRNLAIASA--RMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRP 172          
The following BLAST results are available for this feature:
BLAST of CX290242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
C3H43_ARATH1.756e-2260.26Zinc finger CCCH domain-containing protein 43 OS=A... [more]
C3H67_ARATH1.644e-2060.00Zinc finger CCCH domain-containing protein 67 OS=A... [more]
C3H13_ARATH1.392e-1975.00Zinc finger CCCH domain-containing protein 13 OS=A... [more]
C3H32_ARATH5.473e-1662.75Zinc finger CCCH domain-containing protein 32 OS=A... [more]
C3H63_ORYSJ6.051e-1562.75Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H57_ARATH7.903e-1560.78Zinc finger CCCH domain-containing protein 57 OS=A... [more]
C3H34_ARATH1.348e-1461.54Zinc finger CCCH domain-containing protein 34 OS=A... [more]
C3H33_ARATH1.348e-1460.78Zinc finger CCCH domain-containing protein 33 OS=A... [more]
C3H66_ORYSJ1.761e-1458.82Zinc finger CCCH domain-containing protein 66 OS=O... [more]
C3H12_ORYSJ2.299e-1450.00Zinc finger CCCH domain-containing protein 12 OS=O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022A12SK IF1 Citrus clementina cDNA clone C02022A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290242 ID=CX290242; Name=CX290242; organism=Citrus clementina; type=EST; length=730bp
GAATTCGGCACGAGGGTCATAAACAACAACCCATTGGTAGATAATGTCCA
GATAATTCATCAGCCGCAGATGCTAGTTGGTGAGTTCCCAGAACGACCTG
GCCAGCCTGAGTGCAGTTACTTCCTAAGAACGGGAGACTGTAAGTATAAG
TCTAATTGCAAATATCATCATCCAAAAAATCGAATCCCTAAGTCACCACC
ATGCACTCTCAGCGACAAGGGTCTGCCACTGCGGCCTGTAAGTTCTGATT
TTCAGCTGTGCTTTTGGATGATATACTTACTTGAAAATGACAATTTGAAT
TGCCACCGAATTCTCAGTTACAGAGTGAAAACAAAAACTGCAGTCTACTG
TAAAACAAATCTATGCTCTTACAAAGGTGATGGATATTGACAATGTGTTC
CTCAGTGGTTGTTTATCTGTTTTGTTGCTTCTAAAATCTTCTTCGCTGAT
GGTGTTAATGAGAGACTACTGTTTCTTTTTATCAGTTTTTGACTTTTAGT
CATAAGAATCTGAACTTTGTTTGACCACATCAAGCCACTGAGTTTTCTAT
TTTGTGACCTCTAGTTCTTGGTTTTTGAAATACAGGGTCAAAACGTCTGT
TCATATTATAGCCGCTATGGCATTTGCAAGTTTGGGCCGGCTTGTAAATA
TGATCATCCGATACATCCAGATGCTTCAGCTGAGTATGGGCTAGATCCGC
CTCCATCATTTGGCGACTCTACACTAGGGC
back to top