CX290244

Overview
NameCX290244
Unique NameCX290244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.644e-79
Identity = 152/218 (69.72%), Postives = 172/218 (78.90%), Query Frame = 1
Query:   58 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDH-----------XXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQWGTNNEGIPSA 678
            DAEG++KLA+LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL KVN KAAESLADPEEYSNLF+DWQVAL+VE+KA  TRGV+  A+DY +HADKS MTLVEAFR++Q+EEE++LENGD+DH                                    +VD DSTDGAVLVNG+EA+E+WGTNNEG PSA
Sbjct:  709 DAEGVTKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEEKEAEEEEGIVDGDSTDGAVLVNGSEADEEWGTNNEGNPSA 926          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 7.360e-72
Identity = 141/224 (62.95%), Postives = 163/224 (72.77%), Query Frame = 1
Query:    4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDL---------DHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 648
            +RH +D            DA+G+ KLA+LAKEQGKNNVAFLCLFMLG++EDCL LLVESNRIPEAALMARSYLPSKVSEIVA+WR DL K++PKAAESLADPEEY NLF++WQVAL++E++AA TRGVHPPA DY +HAD+ + TLV+AFR MQIEEE  LE GD+         D                         VVVDADSTDGAVLVNGNE+EEQW
Sbjct:  690 MRHAMDLSGLLLLYSSLGDADGMMKLAALAKEQGKNNVAFLCLFMLGQVEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEEWQVALSLENRAAETRGVHPPAGDYCSHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSDGRQQNVEEEAVVVDADSTDGAVLVNGNESEEQW 913          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.419e-69
Identity = 136/195 (69.74%), Postives = 155/195 (79.49%), Query Frame = 1
Query:   58 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPV---VVDADSTDGAVLVNGNE 633
            DAEG+SKLA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL KVNPKAAESLADPEEYSNLF+DWQVAL+VE+  A TRGV+  AE+Y +HADK  +TLVEAFR++Q+E E++LENG++DH                            VVDADSTDGAVLVNG+E
Sbjct:  709 DAEGVSKLACLAKEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEGVVDADSTDGAVLVNGSE 903          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.421e-68
Identity = 135/221 (61.09%), Postives = 158/221 (71.49%), Query Frame = 1
Query:   10 HEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNNE 663
            H +D            DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP+EY NLF+DWQ+AL VE+  A  RG++PPAE+Y+ HA++   TLVEAF+ M I  E+ L  ENGD  H                        V V+AD STDGAVLVNGN+ EEQWGTNNE
Sbjct:  693 HAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGAVLVNGNDTEEQWGTNNE 906          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.216e-66
Identity = 132/221 (59.73%), Postives = 158/221 (71.49%), Query Frame = 1
Query:   10 HEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNNE 663
            H +D            DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP EY NLF+DWQ+AL VE+  A  RG++ PA++Y+ HA++   TLVEAF++M+I +E+ L  ENGD  H                        V V+AD STDG VLVNGN+ EEQWGTNNE
Sbjct:  693 HAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPNEYPNLFEDWQIALNVEANVAPKRGIYAPAKEYIIHAERPNETLVEAFKNMRIHQEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGTVLVNGNDTEEQWGTNNE 906          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.648e-64
Identity = 132/202 (65.35%), Postives = 146/202 (72.28%), Query Frame = 1
Query:   58 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQI----EEEDTL-ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 648
            DAEGI KLAS AKE GKNNVAFLCLFMLGKLEDC+QLL++SNRIPEAALMARSYLPSKVSEIVAIWR DL KVNPKAAESLADP EY NLF+DWQVAL VE   A+ R  +PPA++Y+NHA+KS MTLVEAF+ MQ+    E ED L ENG+ D                         V VDAD  +  VLVNG E EEQW
Sbjct:  709 DAEGIEKLASQAKEHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNLFEDWQVALTVEKNVASRRVHYPPADEYLNHAEKSDMTLVEAFKRMQVIEDEETEDALDENGEPDE---------EVLEENKVEESTDEAVEVDADEPEETVLVNGKEGEEQW 901          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408
            + H  D            +A  ++KLA  A+  GKNNVAF+  F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  690 LHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408
            + H  D            +A  ++KLA  A+  GKNNVAF+  F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  690 LHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408
            + H  D            +A  ++KLA  A+  GKNNVAF+  F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  690 LHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824          
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.237e-27
Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408
            + H  D            +A  ++KLA  A+  GKNNVAF+  F+ GK++ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y
Sbjct:  690 LHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHAELWPAKQY 824          
The following BLAST results are available for this feature:
BLAST of CX290244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COB22_ARATH3.644e-7969.72Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
COB21_ARATH7.360e-7262.95Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
COB23_ARATH3.419e-6969.74Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB22_ORYSJ8.421e-6861.09Coatomer subunit beta'-2 OS=Oryza sativa subsp. ja... [more]
COB23_ORYSJ1.216e-6659.73Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
COB21_ORYSJ5.648e-6465.35Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
COPB2_RAT1.898e-2746.67Coatomer subunit beta' OS=Rattus norvegicus GN=Cop... [more]
COPB2_MOUSE1.898e-2746.67Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_BOVIN1.898e-2746.67Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1... [more]
COPB2_PONAB3.237e-2745.93Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02022B02SK IF1 Citrus clementina cDNA clone C02022B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290244 ID=CX290244; Name=CX290244; organism=Citrus clementina; type=EST; length=749bp
CGAATTCGGCACGAGGTGGATTTGAGTGGTTTGTTGCTGCTCTATTCTTC
TTTAGGAGACGCCGAAGGGATATCCAAACTTGCTTCTCTAGCTAAAGAGC
AAGGAAAGAACAATGTTGCATTCCTTTGTTTATTTATGTTGGGTAAATTG
GAAGACTGCCTCCAGCTGTTAGTGGAAAGTAATCGGATACCTGAGGCTGC
TTTGATGGCAAGATCATACCTTCCAAGCAAGGTTTCAGAGATTGTTGCTA
TTTGGAGAAAAGACCTCCAAAAGGTGAACCCAAAAGCTGCTGAATCTCTG
GCTGATCCTGAAGAGTATTCTAATCTATTTGATGATTGGCAAGTTGCTCT
TGCTGTTGAGTCCAAAGCTGCTGCTACCAGGGGTGTACATCCTCCTGCAG
AGGACTATGTAAACCATGCAGATAAATCATACATGACGCTTGTGGAGGCT
TTCAGACACATGCAAATTGAAGAAGAGGACACTCTTGAAAATGGAGATCT
TGATCATGAGGGTTCCGAACAAAATGGAGAAGAGAATGCAGAGGAACAGA
ATGGAGAAGAAGGAAGCCAAGAGGAGCCTGTCGTAGTGGATGCTGATTCA
ACAGACGGTGCAGTACTCGTTAACGGTAACGAGGCTGAAGAACAGTGGGG
TACGAATAATGAAGGAATCCCGTCAGCCTAAAAGCAATTGGTTGGGGCAG
TGTGAAATCCAAATTTTGTCTCTGTGCTTACCCACGTCATCAGGATTCA
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