CX290244
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 3.644e-79 Identity = 152/218 (69.72%), Postives = 172/218 (78.90%), Query Frame = 1 Query: 58 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDH-----------XXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQWGTNNEGIPSA 678 DAEG++KLA+LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL KVN KAAESLADPEEYSNLF+DWQVAL+VE+KA TRGV+ A+DY +HADKS MTLVEAFR++Q+EEE++LENGD+DH +VD DSTDGAVLVNG+EA+E+WGTNNEG PSA Sbjct: 709 DAEGVTKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEEKEAEEEEGIVDGDSTDGAVLVNGSEADEEWGTNNEGNPSA 926
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 7.360e-72 Identity = 141/224 (62.95%), Postives = 163/224 (72.77%), Query Frame = 1 Query: 4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDL---------DHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 648 +RH +D DA+G+ KLA+LAKEQGKNNVAFLCLFMLG++EDCL LLVESNRIPEAALMARSYLPSKVSEIVA+WR DL K++PKAAESLADPEEY NLF++WQVAL++E++AA TRGVHPPA DY +HAD+ + TLV+AFR MQIEEE LE GD+ D VVVDADSTDGAVLVNGNE+EEQW Sbjct: 690 MRHAMDLSGLLLLYSSLGDADGMMKLAALAKEQGKNNVAFLCLFMLGQVEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEEWQVALSLENRAAETRGVHPPAGDYCSHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSDGRQQNVEEEAVVVDADSTDGAVLVNGNESEEQW 913
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.419e-69 Identity = 136/195 (69.74%), Postives = 155/195 (79.49%), Query Frame = 1 Query: 58 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTLENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPV---VVDADSTDGAVLVNGNE 633 DAEG+SKLA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL KVNPKAAESLADPEEYSNLF+DWQVAL+VE+ A TRGV+ AE+Y +HADK +TLVEAFR++Q+E E++LENG++DH VVDADSTDGAVLVNG+E Sbjct: 709 DAEGVSKLACLAKEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEGVVDADSTDGAVLVNGSE 903
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 8.421e-68 Identity = 135/221 (61.09%), Postives = 158/221 (71.49%), Query Frame = 1 Query: 10 HEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNNE 663 H +D DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP+EY NLF+DWQ+AL VE+ A RG++PPAE+Y+ HA++ TLVEAF+ M I E+ L ENGD H V V+AD STDGAVLVNGN+ EEQWGTNNE Sbjct: 693 HAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHAERPNETLVEAFKSMHIHLEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGAVLVNGNDTEEQWGTNNE 906
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 1.216e-66 Identity = 132/221 (59.73%), Postives = 158/221 (71.49%), Query Frame = 1 Query: 10 HEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQIEEEDTL--ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDAD-STDGAVLVNGNEAEEQWGTNNE 663 H +D DAEG++KL S+AKEQGKNNVAFLC FMLGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDLQKVNPKAAESLADP EY NLF+DWQ+AL VE+ A RG++ PA++Y+ HA++ TLVEAF++M+I +E+ L ENGD H V V+AD STDG VLVNGN+ EEQWGTNNE Sbjct: 693 HAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQKVNPKAAESLADPNEYPNLFEDWQIALNVEANVAPKRGIYAPAKEYIIHAERPNETLVEAFKNMRIHQEEVLPDENGDDTH-------EAIEENGVEESQEDAVEVDVEADGSTDGTVLVNGNDTEEQWGTNNE 906
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 5.648e-64 Identity = 132/202 (65.35%), Postives = 146/202 (72.28%), Query Frame = 1 Query: 58 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNHADKSYMTLVEAFRHMQI----EEEDTL-ENGDLDHXXXXXXXXXXXXXXXXXXXXXXXPVVVDADSTDGAVLVNGNEAEEQW 648 DAEGI KLAS AKE GKNNVAFLCLFMLGKLEDC+QLL++SNRIPEAALMARSYLPSKVSEIVAIWR DL KVNPKAAESLADP EY NLF+DWQVAL VE A+ R +PPA++Y+NHA+KS MTLVEAF+ MQ+ E ED L ENG+ D V VDAD + VLVNG E EEQW Sbjct: 709 DAEGIEKLASQAKEHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNLFEDWQVALTVEKNVASRRVHYPPADEYLNHAEKSDMTLVEAFKRMQVIEDEETEDALDENGEPDE---------EVLEENKVEESTDEAVEVDADEPEETVLVNGKEGEEQW 901
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408 + H D +A ++KLA A+ GKNNVAF+ F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 690 LHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408 + H D +A ++KLA A+ GKNNVAF+ F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 690 LHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408 + H D +A ++KLA A+ GKNNVAF+ F+ GKL+ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 690 LHHAQDYGGLLLLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQY 824
BLAST of CX290244 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.237e-27 Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 4 IRHEVDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 408 + H D +A ++KLA A+ GKNNVAF+ F+ GK++ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF + A VE T PA+ Y Sbjct: 690 LHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHAELWPAKQY 824 The following BLAST results are available for this feature:
BLAST of CX290244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290244 ID=CX290244; Name=CX290244; organism=Citrus clementina; type=EST; length=749bpback to top |