CX290245

Overview
NameCX290245
Unique NameCX290245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290245 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 96/244 (39.34%), Postives = 135/244 (55.33%), Query Frame = 1
Query:   25 LKKLCAAMGNLIKLHHLNNSNTSSLEEMPVGIGRLTCLQTLCNFVVGKDSGSRLRELKSLTQLGGTLCISNLENVKHIIDAEDAQLDRKENLKELWLRWTRNTN----GSSSRXXXXXXGVLDMLKPHKNLEQFCISGYGGTNFSTWLGNSSLSNLVTLKFEYCSMCTALPLVGQLPSLKHLVVCGMSSVRRFDPEFY---GKVASIPFPCLETLCFEDMEEWEDWIPHGSGQGVEGFPKLREL 735
            L  L  ++  LI L  L+   T  L EMP GI +L  LQ L NFV+G+ SG+ L ELK L+ L GTL IS L+NV    +A+DA L RK  L  L L+WT   +    GS +        VL ML+PH +L+ FCI  Y G  F  WLG+SS   + ++    C++C +LP VGQLPSLK+L +   + +++   +F+        +PF  L+ L F  M  W++WI      G+  FP L++L
Sbjct:  632 LTSLPKSIAELINLRLLDLVGTP-LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKL 872          
BLAST of CX290245 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 86/247 (34.82%), Postives = 132/247 (53.44%), Query Frame = 1
Query:   25 LKKLCAAMGNLIKLHHLNNSNTSSLEEMPVGIGRLTCLQTLCNFVVGKDSGSRLRELKSLTQLGGTLCISNLENVKHIIDAEDAQLDRKENLKELWLRW----TRNTNGSSSRXXXXXXGVLDMLKPHKNLEQFCISGYGGTNFSTWLGNSSLSNLVTLKFEYCSMCTALPLVGQLPSLKHLVVCGMSSVRRFDPEFYGKVASI------PFPCLETLCFEDMEEWEDWIPHGSGQGVEGFPKLREL 735
            LK+L   + NLI L +L+   T  L +MP   GRL  LQTL  F V    GSR+ EL  L  L G L I  L+ V  + DA +A L+ K++L+E+   W    + + N ++         V + L+PH+++E+  I  Y G  F  WL + S S +V ++   C  CT+LP +GQLP LK L + GM  ++    +FY     +      PF  LETL F+++ +W++W+     +G + FP L++L
Sbjct:  638 LKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKL 882          
BLAST of CX290245 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 1
Query:   94 SLEEMPVGIGRLTCLQTLCNFVVGKDSGSRLRELKSLTQLGGTLCISNLENVKHIIDAEDAQLDRKENLKELWLRWTRNTNGSSSRXXXXXXGVLDMLKPHKNLEQFCISGYGGTNFSTWLGNSSLSNLVTLKFEYCSMCTALPLVGQLPSLKHLVV-CGMSSVRRFDPEFY-GKVASIPFPCLETLCFEDMEEWEDWIPHGSGQGVEGFPKLREL 735
            SL   P  IG LTCL++L  FV+GK  G +L ELK+L  L G++ I+ L+ VK   DA++A L  K NL  L L W  +              VL+ LKPH NL+   I+G+GG     W+  S L N+V+++   C  C+ LP  G+LP L+ L +  G + V   +   + G+     FP L  L   D    +  +     +G + FP L E+
Sbjct:  607 SLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLN-LYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSE------VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVEDNVHPGR-----FPSLRKLVIWDFSNLKGLL---KMEGEKQFPVLEEM 807          
BLAST of CX290245 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 85/243 (34.98%), Postives = 115/243 (47.33%), Query Frame = 1
Query:   31 KLCAAMGNLIKLHHLNN---SNTSSLEEMPVGIGRLTCLQTLCNFVVGKDSGSRLRELKSLTQLGGTLCISNLENVKHIIDAEDAQLDRKENLKELWLRWTRNTNGSSSRXXXXXXGVLDMLKPHKNLEQFCISGYGGTNFSTWLGNSSLSNLVTLKFEYCSMCTALPLVGQLPSLKHLVV----CGMSSVRRFDPEFY-GKVASIPFPCLETLCFEDMEEWEDWIPHGSGQGVEGFPKLREL 735
            KLC       KL  L N     + SL  MP  IG LTCL+TL  FVVG+  G +L EL +L  L G++ IS+LE VK+  DA++A L  K NL  L + W    N            VL+ LKPH NL    I G+ G +   W+ +S L N+V++       C+ LP  G LP L+ L +      +  V   D + + G    I FP L  L   D    +  +     +G E FP L E+
Sbjct:  584 KLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLN-LYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWN---NFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLL---KKEGEEQFPVLEEM 819          
BLAST of CX290245 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   97 LEEMPVGIGRLTCLQTLCNFVVGKDSGSRLRELKSLTQLGGTLCISNLENVKHIIDAEDAQLDRKENLKELWLRWTRNTNGSSSRXXXXXXGVLDMLKPHKNLEQFCISGYGGTNFSTWLGNSSLSNLVTLKFEYCSMCTALPLVGQLPSLKHL 558
            L   P  IG LTCL+TL  F+VG   G +L ELK+L  L G++ I++LE VK+  DAE A L  K NL+ L + W    N   +R       VL+ LKPH NL+   I  +GG  F +W+ +S L  +++++ + C  C  LP  G+LP L++L
Sbjct:  609 LTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLN-LCGSISITHLERVKNDTDAE-ANLSAKANLQSLSMSWD---NDGPNRYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENL 757          
BLAST of CX290245 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 1
Query:   31 KLCAAMGNLIKLHHLNNSNTSSLEEMPVGIGRLTCLQTLCNFVVGKDSGSRLRELKSLTQLGGTLCISNLENVKHIIDAEDAQLDRKENLKELWLRWTRNTNGSSSRXXXXXXGVLDMLKPHKNLEQFCISGYGGTNFSTWLGNSSLSNLVTLKFEYCSMCTALPLVGQLPSLKHL 558
            KLC+ + NL+  H         L  MP  IG LTCL+TL  FVVG+  G +L EL++L  L G + I++LE VK+ ++A++A L  K NL  L + W R     S         VL+ LKPH NL+   I  + G     W+ +S L N+V++    C  C+ LP  G+LP L+ L
Sbjct:  603 KLCS-LRNLVLDH-------CPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLN-LRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVK-----VLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESL 764          
The following BLAST results are available for this feature:
BLAST of CX290245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DRL21_ARATH6.315e-3639.34Putative disease resistance protein At3g14460 OS=A... [more]
R13L1_ARATH3.465e-3434.82Putative disease resistance RPP13-like protein 1 O... [more]
RGA1_SOLBU2.752e-2334.72Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU3.594e-2334.98Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA4_SOLBU3.043e-2240.26Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU2.576e-2138.07Putative disease resistance protein RGA3 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionC02022B03SK IF1 Citrus clementina cDNA clone C02022B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290245 ID=CX290245; Name=CX290245; organism=Citrus clementina; type=EST; length=735bp
GAATTCGGCACGAGGGGTTGGCGACTGAAAAAGTTGTGTGCAGCCATGGG
AAACCTCATCAAATTGCATCATCTCAATAATTCAAATACATCTTCGTTGG
AGGAAATGCCAGTCGGAATTGGTAGGCTGACTTGTCTTCAGACGTTGTGT
AATTTTGTTGTGGGAAAAGACAGTGGTTCCCGGTTACGAGAGCTAAAGTC
CTTGACACAACTTGGGGGGACACTTTGCATTTCAAATTTGGAGAATGTAA
AACACATTATTGATGCCGAGGACGCTCAATTGGATAGAAAGGAGAATCTT
AAAGAATTATGGCTTCGATGGACTCGCAATACTAATGGTTCATCTTCAAG
GGAGGCAGAAGCTGAAGAGGGCGTGCTTGACATGCTAAAACCCCATAAAA
ATCTGGAACAATTTTGTATCAGCGGCTATGGAGGCACAAATTTTTCAACT
TGGTTAGGAAATTCCTCATTGTCAAATTTAGTAACACTTAAATTTGAATA
TTGTAGCATGTGTACTGCCCTGCCGTTGGTCGGGCAACTACCCTCTCTAA
AGCATCTTGTAGTATGTGGAATGAGCAGCGTAAGGAGATTTGATCCAGAG
TTCTATGGGAAGGTTGCTTCAATTCCTTTTCCATGCTTGGAGACTCTTTG
TTTTGAAGACATGGAAGAATGGGAAGACTGGATTCCTCATGGATCCGGTC
AAGGAGTTGAAGGGTTTCCTAAATTGAGAGAGCTT
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