CX290249

Overview
NameCX290249
Unique NameCX290249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10345 contig Ccv1_Contig10345:199..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA1_ARATH (Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 4.604e-115
Identity = 204/223 (91.48%), Postives = 211/223 (94.62%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686
            GCGAVLVSGNELRLALRAGFDPTKCIFNGNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHVTGVKTN
Sbjct:  140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTGVKTN 362          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA2_ARATH (Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 2.985e-114
Identity = 203/223 (91.03%), Postives = 210/223 (94.17%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686
            GCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHVTGVKTN
Sbjct:  145 GCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTGVKTN 367          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_ORYSJ (Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza sativa subsp. japonica GN=LYSA PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 5.452e-108
Identity = 189/225 (84.00%), Postives = 209/225 (92.89%), Query Frame = 3
Query:   12 EGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686
            E GCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ GVFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQWFLD++K++ N++ LVG HCHLGSTITKVDIFRDAA LMVNY+D+IRAQGFE++YLNIGGGLGIDY+HT AVLP P +LI+TVRELVLSR+L LIIEPGRSLIANTCC VN VTGVK+N
Sbjct:  143 ELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESGVFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQWFLDSIKSYSNDITLVGVHCHLGSTITKVDIFRDAAGLMVNYVDEIRAQGFELEYLNIGGGLGIDYHHTDAVLPTPMDLINTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKSN 367          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_AQUAE (Diaminopimelate decarboxylase OS=Aquifex aeolicus GN=lysA PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 84/224 (37.50%), Postives = 134/224 (59.82%), Query Frame = 3
Query:   12 EGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            E G GA +VSG EL LA +AG  P + ++ G GK  ++L  A    + + NV+S  +L+ +   +   GKK  + +R+NPDVDP+ HPY+ATG + SKFG+   + Q   +      N L++VG HCH+GS I  +  +R+A   +V+  + +  +GF++ YL+IGGGLGI Y       P P++L D +++L+ +    +I+EPGRS++ N   L+  V  +K
Sbjct:   78 ELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKE-PAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLK 299          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_PSEAE (Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa GN=lysA PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 84/222 (37.84%), Postives = 131/222 (59.01%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G G  +VS  EL   L AG DP K +F+G GK  +D+  A + GV   NV+S  +LE +   +   G K  V LR+NPDVD Q HPY++TG K +KFGI  ++ +  + A  A  + L+++G  CH+GS +T+++ F DA   ++  +D++  +G  + +L++GGGLG+ Y       P   + I  +RE +  R+L L+ EPGRS++AN   L+  V  +K
Sbjct:   75 GAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVHCFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAE-AVYARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGGLGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLK 293          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_ARCFU (Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus GN=lysA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 88/232 (37.93%), Postives = 129/232 (55.60%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G GA + S  EL LA  AGF     +FNGN K  +++ +    GV  +VDS  +L  I   ++  GK+V +  R+NPDVDP+ HP +ATG + SKFGI +E ++      +A+   LKL     VG HCH+GS I  +  F  A   +++    I   G E+ ++++GGGLGIDY   GA  P P++L   +      R+  L+ +  L +EPGRS++ NT  L+  V  VK
Sbjct:   71 GFGADVFSDGELYLASLAGFRKDMVLFNGNSKSRKEIEMGVTAGVKFSVDSLDELRTISKIAKEVGKEVEIAFRVNPDVDPKTHPKIATGLRESKFGIPHEMVR------EAYEMALKLDGVVPVGIHCHIGSQILDLSPFVHALNKVMDIAVDIEKLGVELSFVDMGGGLGIDYEGKGA--PTPKDLASAILPEFEGRKADLTSDPQLWLEPGRSIVGNTTVLITRVNAVK 294          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMA (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A GN=lysA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.318e-32
Identity = 85/228 (37.28%), Postives = 130/228 (57.02%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G G  +VSG EL   L AG D  K IF+G GK   ++  A   GV   N++S  +++ I   +   GK  +V LR+NPDVD + HPY++TG K +KFGI       + DA++A+      PN LK++G  CH+GS +T +    +A   ++  +D + A+G  +++L++GGG+GI Y      +P        V++L+ +R L LI+EPGRSL+ N   L+  V  VK
Sbjct:   67 GSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIA------YADALEAYRHAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDED--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVK 285          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_METJA (Diaminopimelate decarboxylase OS=Methanocaldococcus jannaschii GN=lysA PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.318e-32
Identity = 80/229 (34.93%), Postives = 131/229 (57.21%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            GCGA +VSG EL +A  +     K +FNGN K  E++++  +  +   NVDS  +L  I   ++  G+  NV  RINP+V+P+ HP ++TG K +KFG+  E     + A+K       + +VG HCH+GS +T +  F +    +++++ +++ +G E++ +N+GGGLGI YY    + P  ++L D +   +L         NLI+EPGRSL+A    L+  V  +K
Sbjct:   88 GCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQI-PTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIK 314          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMB (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B GN=lysA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 86/228 (37.72%), Postives = 129/228 (56.58%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G G  +VSG EL   L AG D  K IF+G GK   ++  A   GV   N++S  +++ I   +   GK   V LRINPDVD + HPY++TG K +KFGI       + DA++A+      PN LK++G  CH+GS +T +    +A   ++  +D + A+G  +++L++GGG+GI Y      +P        V++L+ +R L LI+EPGRSL+ N   L+  V  VK
Sbjct:   67 GSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIA------YADALEAYHYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVK 285          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_ZYMMO (Diaminopimelate decarboxylase OS=Zymomonas mobilis GN=lysA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 79/222 (35.59%), Postives = 120/222 (54.05%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G GA +VS  E+R A+ AG  P + +F+G GK  E++  A + G+   N++S  ++E +   +   GKK  V LRINPDVDP  H  +ATG  ++KFGI  E      + + ++P+ LK+ G   H+GS IT +  F  AA  +   I  +   G  ++  ++GGGLG+ Y       P      + ++ +    N  LI EPGRSLIAN   L++ V  +K
Sbjct:   78 GLGADVVSAGEIRRAVHAGIPPERIVFSGVGKTAEEMRYALEIGIGQFNIESVSEIEMLAEVATSLGKKAAVALRINPDVDPHTHAKIATGKADTKFGIAAEDALSAYEKLASYPS-LKIQGIASHIGSQITDLAPFEAAAERIYEIITALEKAGHAIETADLGGGLGVRYKDDQPEPPSVEAYGEMIKRVTKGWNCRLIFEPGRSLIANAGVLLSKVIRIK 298          
The following BLAST results are available for this feature:
BLAST of CX290249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
DCDA1_ARATH4.604e-11591.48Diaminopimelate decarboxylase 1, chloroplastic OS=... [more]
DCDA2_ARATH2.985e-11491.03Diaminopimelate decarboxylase 2, chloroplastic OS=... [more]
DCDA_ORYSJ5.452e-10884.00Probable diaminopimelate decarboxylase, chloroplas... [more]
DCDA_AQUAE2.952e-3737.50Diaminopimelate decarboxylase OS=Aquifex aeolicus ... [more]
DCDA_PSEAE3.608e-3537.84Diaminopimelate decarboxylase OS=Pseudomonas aerug... [more]
DCDA_ARCFU8.887e-3437.93Diaminopimelate decarboxylase OS=Archaeoglobus ful... [more]
DCDA_NEIMA8.318e-3237.28Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_METJA8.318e-3234.93Diaminopimelate decarboxylase OS=Methanocaldococcu... [more]
DCDA_NEIMB1.419e-3137.72Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_ZYMMO7.042e-3135.59Diaminopimelate decarboxylase OS=Zymomonas mobilis... [more]

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Properties
Property NameValue
Genbank descriptionC02022B07SK IF1 Citrus clementina cDNA clone C02022B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290249 ID=CX290249; Name=CX290249; organism=Citrus clementina; type=EST; length=687bp
GAATTCGGCACGAGGGGGGTTGTGGAGCTGTTCTTGTTAGTGGCAATGAG
CTGAGGCTTGCTCTTCGAGCTGGATTTGATCCCACCAAGTGTATCTTTAA
TGGGAATGGGAAGCTTTTGGAGGATTTGGTGCTGGCTGCACAAGAGGGTG
TGTTTGTTAATGTTGATAGTGAGTTTGACTTGGAGAATATTGTTGTAGCT
TCAAGAATTGCTGGCAAGAAGGTTAATGTGTTGCTTCGGATTAATCCTGA
TGTGGATCCTCAGGTCCATCCTTATGTTGCTACTGGGAACAAGAACTCTA
AATTTGGCATTAGGAATGAGAAGTTGCAATGGTTTTTGGATGCCGTGAAG
GCACATCCTAATGAGTTGAAGCTTGTGGGGGCTCATTGCCATCTTGGTTC
CACCATTACCAAGGTGGACATATTCAGGGATGCTGCAGTTCTTATGGTCA
ATTACATTGACAAAATCCGCGCCCAAGGCTTTGAAGTTGATTACTTGAAC
ATTGGAGGTGGTTTAGGAATAGACTATTATCACACTGGTGCTGTCCTTCC
CAAACCCAGAAATCTGATTGACACCGTTAGGGAGCTGGTTCTGTCGAGAA
ATCTGAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAATACCTGC
TGCTTGGTTAATCACGTCACTGGGGTTAAAACTAATG
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