CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP24_ARATH (Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.885e-86
Identity = 162/210 (77.14%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   16 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            DEWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ + V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQGSTKL K V+FPL+L L R  LV+ S E  +YELVAT+THHG DPSKGHYT DAR  N QWL FDDASVT IGT  VLHDQAYVLFYKQV
Sbjct:  342 DEWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQV 551          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBPB_DICDI (Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.113e-37
Identity = 91/213 (42.72%), Postives = 128/213 (60.09%), Query Frame = 1
Query:   16 DEWETVGPKNKSAV-TRTQSFLPSA-LSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            D WE VG K K+A+ T +Q  LP   +S IF G L+S     G+K S TV+PF  LHLDI  E ++++EDAL+ F  PE +EGY T ST     ++A KS   ++L +ILI+H  RF++ S  S KL K +RFP QL L      +     +KY L + V+HHGR  S+GHYT D  +    QW+ +DD++ T +    VL+ +AY+L Y+ V
Sbjct:  243 DNWEVVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPEEINSLEDALKFFMKPEIIEGY-TCSTKKI-EISASKSWSFESLPRILIVHFKRFAFESDTSKKLDKLIRFPTQLSLS---TASNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYDDSTFTEVKEQDVLNREAYLLLYQLV 450          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP10_HUMAN (Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 87/225 (38.67%), Postives = 130/225 (57.78%), Query Frame = 1
Query:    7 GTRDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS-TKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDASVTAIGTSKVL----HDQAYVLFYKQV 645
            G+ DEWE VGP+NK++VTR   F+ + ++ IFGG ++SVV  Q +K SAT+QPF  L LDI S+ + T++DAL    A E+++GY T +      V   + V ++ L  +L+LHL RF Y   G   KL K++ +P+ L + ++LL +P  +       R Y L A V HHG   + GHYT D      + WL  DD +V  I   +V+       AY+L+Y++V
Sbjct:  575 GSEDEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKELL-SPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRRV 795          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP10_MOUSE (Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36
Identity = 87/225 (38.67%), Postives = 129/225 (57.33%), Query Frame = 1
Query:    7 GTRDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS-TKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYKQV 645
            G+ DEWE VGPKNK+++TR   F+ + ++ IFGG ++SVV  Q +K SAT+Q F  L LDI S+ + T++DAL    A E+++GY T +      V   + V ++ L  +L+LHL RF Y   G   KL K++ +P+ L + R+LL +P  +       R Y L A V HHG   + GHYT D      + WL  DD +V  I   +V+       AY+L+Y++V
Sbjct:  569 GSEDEWEQVGPKNKTSITRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQLFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNIDYPVDLEISRELL-SPGIKNKNFKCQRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPPADRTAYLLYYRRV 789          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP3_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 3 OS=Schizosaccharomyces pombe GN=ubp3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.982e-27
Identity = 79/226 (34.96%), Postives = 118/226 (52.21%), Query Frame = 1
Query:   22 WETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVTPSAEGR---KYELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAI--------------GTSKVLHDQ--AYVLFY 636
            W  VG   K  + R+ +   S +S IFGGQL+S ++    + S  ++PF  L LDI +E +H++ DAL   +APE L  + +S     G VTA K + I++L  +LILHL RF Y + G T K +K + +P +L + +++  +PS  G    +Y+L A V HHG   S GHYT D +  +   W   DD  +  +                SK+ H    AY+LFY
Sbjct:  288 WTEVGKNKKPVIARSATVERSPISQIFGGQLRSTLRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSK----GNVTATKQMYIESLPPVLILHLKRFFYEASGGTQKNYKPIAYPARLSIPQNVF-SPSVRGSIHPEYDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIHRVPIHDVENSELSADPSLSKLGHGDRVAYLLFY 508          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP3_YEAST (Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae GN=UBP3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.376e-20
Identity = 71/236 (30.08%), Postives = 113/236 (47.88%), Query Frame = 1
Query:   34 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNK--ASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS---------------TKLHKSVRFPLQLVLGRDLLV-------TPSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHD--------QAYVLFYKQ 642
            G K K+A  RT   +PS +S +FGGQ +SV+    NK   S T+ PF  + LDI    V+ +E A + FS  E L     SS+GN   V AKK   I  L ++L++   RFS+ +  +                K+ K +++  +L++  + +        T   + R+Y+L   + HHG     GHYTAD  +  +++W   DD ++T +    VL           AY+L Y++
Sbjct:  679 GKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLP--FKSSSGND--VEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQK 910          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP8_HUMAN (Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.550e-19
Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            S +  +F GQ KS V+    +K S T + F+ L L + S +  T++D LRLFS  E L +  R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +     ++ P    +KY L +   H+G     GHYTA  +     +W  FDD  V+ I  S V    AY+LFY
Sbjct:  920 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP8_MOUSE (Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.197e-18
Identity = 64/188 (34.04%), Postives = 94/188 (50.00%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            S +  +F GQ KS V+     + S T + F+ L L + S +  T++D LRLFS  E L +  R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +     ++ P    +KY L +   H+G     GHYTA  +     +W  FDD  V+ I  S V    AY+LFY
Sbjct:  882 SIIVALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: U17L5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 64/187 (34.22%), Postives = 92/187 (49.20%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL   + PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +  P+     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLAKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP21_ARATH (Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana GN=UBP21 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.685e-16
Identity = 65/202 (32.18%), Postives = 95/202 (47.03%), Query Frame = 1
Query:   37 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAE-GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            PKN+     +Q    + + ++FGG L S +     N  S T +P L   L+I  E V+T+  AL  F+  E LE   T       V T +K ++   L  +   HL RF+       K+   + FPL+L L   +      E   +Y L A V H G   + GHY++  R   + W +FDD+ VT I   +VL   AY+LFY
Sbjct:  270 PKNQLGSVSSQDL--NIVDNVFGGGLMSTLCCCNCNSVSNTFEPSLGWSLEI--EDVNTLWKALESFTCVEKLEDQLTCDNCKEKV-TKEKQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLELDLSPFMSSNHDPEVSTRYHLYAFVEHIGIRATFGHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFY 466          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP24_ARATH1.885e-8677.14Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabid... [more]
UBPB_DICDI2.113e-3742.72Ubiquitin hydrolase B OS=Dictyostelium discoideum ... [more]
UBP10_HUMAN6.147e-3738.67Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo s... [more]
UBP10_MOUSE3.985e-3638.67Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus mu... [more]
UBP3_SCHPO1.982e-2734.96Probable ubiquitin carboxyl-terminal hydrolase 3 O... [more]
UBP3_YEAST1.376e-2030.08Ubiquitin carboxyl-terminal hydrolase 3 OS=Sacchar... [more]
UBP8_HUMAN7.550e-1934.57Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sa... [more]
UBP8_MOUSE2.197e-1834.04Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus mus... [more]
U17L5_HUMAN2.056e-1634.22Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP21_ARATH2.685e-1632.18Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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