CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.599e-48
Identity = 94/129 (72.87%), Postives = 99/129 (76.74%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFTANGWVQSYGSRCVKPP+IYGDVSRPKAMTVFWS++AQSMT+RPMKGMLTGPVTILNWSFVRNDQP                            RHETCYQIALAIKDEVEDLEK GI VIQ+
Sbjct:  504 LSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQP----------------------------RHETCYQIALAIKDEVEDLEKGGIGVIQI 604          

HSP 2 Score: 25.409 bits (54), Expect = 6.599e-48
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  604 IDEAALREGLP 614          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.121e-47
Identity = 95/129 (73.64%), Postives = 99/129 (76.74%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAF+ANGWVQSYGSRCVKPPIIYGDVSRP  MTVFWSS+AQSMTARPMKGMLTGPVTILNWSFVRNDQP                            RHETCYQIALAIK+EVEDLEKAGINVIQ+
Sbjct:  504 LSGFAFSANGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSSMAQSMTARPMKGMLTGPVTILNWSFVRNDQP----------------------------RHETCYQIALAIKNEVEDLEKAGINVIQI 604          

HSP 2 Score: 25.409 bits (54), Expect = 1.121e-47
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  604 IDEAALREGLP 614          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 9.330e-47
Identity = 94/129 (72.87%), Postives = 97/129 (75.19%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPK MTVFWS+ AQSMT RPMKGMLTGPVTILNWSFVRNDQPR+                            ETCYQIALAIKDEVEDLEKAGI VIQ+
Sbjct:  503 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSTAAQSMTQRPMKGMLTGPVTILNWSFVRNDQPRF----------------------------ETCYQIALAIKDEVEDLEKAGITVIQI 603          

HSP 2 Score: 25.409 bits (54), Expect = 9.330e-47
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  603 IDEAALREGLP 613          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.330e-47
Identity = 94/129 (72.87%), Postives = 96/129 (74.42%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRP  MTVFWS  AQSMT RPMKGMLTGPVTILNWSFVRNDQPR+                            ETCYQIALAIKDEVEDLEKAGINVIQ+
Sbjct:  504 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSQTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRF----------------------------ETCYQIALAIKDEVEDLEKAGINVIQI 604          

HSP 2 Score: 25.409 bits (54), Expect = 9.330e-47
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  604 IDEAALREGLP 614          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURCM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metE PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.124e-37
Identity = 76/129 (58.91%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI+DEV DLEKAG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSV----------------------------SCYQLALAIRDEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 1.124e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.124e-37
Identity = 76/129 (58.91%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI+DEV DLEKAG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSV----------------------------SCYQLALAIRDEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 1.124e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.485e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI++EV DLEKAG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWIAYAQSLTRKPMKGMLTGPVTILNWSFVRDDQPRAV----------------------------SCYQLALAIREEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 2.485e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.485e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI++EV DLEKAG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWIAYAQSLTRKPMKGMLTGPVTILNWSFVRDDQPRAV----------------------------SCYQLALAIREEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 2.485e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.485e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI++EV DLEKAG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWIAYAQSLTRKPMKGMLTGPVTILNWSFVRDDQPRAV----------------------------SCYQLALAIREEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 2.485e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURS3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia sp. (strain 383) GN=metE PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.237e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI++EV DLEKAG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSV----------------------------SCYQLALAIREEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 3.237e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_ARATH6.599e-4872.875-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR1.121e-4773.645-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC9.330e-4772.875-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO9.330e-4772.875-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCM1.124e-3758.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURA41.124e-3758.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH2.485e-3758.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC2.485e-3758.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCA2.485e-3758.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURS33.237e-3758.145-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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