CX290255

Overview
NameCX290255
Unique NameCX290255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:929..1658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.085e-84
Identity = 139/232 (59.91%), Postives = 172/232 (74.14%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 725
            TKY+Q F TQ +ACFWKQYWSYWR+PQYNAIRF MT+VI + FGLI+W  G KT  +QDL N FGAMY+  +FLG  NA +V P I +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG  W + KF  F+Y+M  SFI FTLYGMM++ALTP  Q+A I +SFFLS+WNLFSGFL+ R  IP+WWRWYYW +PVAW LYGL+T QVGD +S+V I
Sbjct: 1170 TKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHI 1401          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.148e-82
Identity = 136/232 (58.62%), Postives = 170/232 (73.28%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 725
            TKY+QPF TQ +ACFWK YWS WR PQYNAIRF MT+VI + FGL++W  G K  K+QDL N FGAMY+  +FLG +NA +V P + +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG+ W + KF  F+Y+M   F+ FTLYGMM+VALTP  Q+A I LSFFLS WNLFSGFL+ R  IP+WWRWYYW SPVAW LYG++T QVGD +S+V I
Sbjct: 1169 TKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHI 1400          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.962e-80
Identity = 133/233 (57.08%), Postives = 170/233 (72.96%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 725
            PT+YSQ F+TQ +ACFWKQ+WSYWRN QYNAIRF MT++I I FG+I+W+KG +  +QQDL NL GA Y+  +FLG +NA +V  V+ +ERTV+YRERAAGM++ +PYA AQVA                  +MIG++W   KF  F+YF++  F  F++YGMM+VALTPG Q+A IV+SFFLS WNLFSGFL+ R  IPVWWRWYYW SPVAW +YG+   QVGD    +E+
Sbjct: 1175 PTQYSQSFITQCKACFWKQHWSYWRNSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGATNASAVQSVVAIERTVFYRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELEL 1407          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.502e-74
Identity = 125/228 (54.82%), Postives = 159/228 (69.74%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLES 713
            T+YSQ F TQ  AC WKQ+WSYWRNP Y A+RF  T  IA+ FG ++WD G K SK QDL N  G+MY+  +FLG  NA SV PV+ +ERTV+YRERAAGM++A+PYA  QV+                  AMIGF+W++GKF  + + M+ + + FT YGMM VA+TP Q VA+IV +FF  VWNLFSGF++ R  +PVWWRWYYW +PVAW LYGLV  Q GD+++
Sbjct: 1154 TQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQT 1381          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.455e-74
Identity = 125/227 (55.07%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDL 707
            PT+YSQ FLTQ  A  WKQ+WSYWRNP Y A+RF  T+ IA+ FG ++WD G KT  +QDL N  G+MY+  +FLG  NA SV PV+ VERTV+YRE+AAGM++AMPYA AQV                   AMIGF+W   KF  + +FM+ SF+ FT YGMM VA+TP   +A++V S F  +WNLFSGFL+ R  +PVWW WYYWL PVAW LYGL+  Q GD+
Sbjct: 1141 PTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDI 1367          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.243e-73
Identity = 123/227 (54.19%), Postives = 157/227 (69.16%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 710
            +++SQPF TQ  AC WKQ+WSYWRNP Y A+R   T  IA+ FG ++WD G K S+ QDL N  G+MY+  +FLG  N+ SV PV+ VERTV+YRE+AAGM++A+PYA AQV                   +MIGF+W + KF   F+FM+ +F+ FT +GMM VA+TP Q VA+IV  FF +VWNLFSGF+V R  IP+WWRWYYW  P+AW LYGLV  Q GDL+
Sbjct: 1155 SEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQ 1381          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.406e-72
Identity = 120/232 (51.72%), Postives = 159/232 (68.53%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVE 722
            PT+YS+ F+TQ  AC WKQ WSYWRNP Y A+R   T+VIA+ FG ++W+ G +T KQQDL N  G+MY+  +++G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGF+W + KF  + +FM+ + + FT YGMM V LTP + +A I+ S F +VWNLFSG+L+ R  IPVWWRWY W+ PVAW LYGLV  Q GD++ ++E
Sbjct: 1168 PTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE 1399          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.114e-72
Identity = 125/227 (55.07%), Postives = 150/227 (66.08%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDL 707
            PTKYS  FL Q  AC WK + SYWRNP YNAIR   T VIA+ FG I+WD G KT K QDL N  G+MYS  +F+G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGFKW   KF  + +FM+ +F+ FT YGMM V LTP   VA+IV S F  +WNLFSGF++ R  +P+WWRWY W+ PVAW LYGLV  Q GD+
Sbjct: 1183 PTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI 1409          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.715e-71
Identity = 123/232 (53.02%), Postives = 152/232 (65.52%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVE 722
            PT+YSQ  LTQ  AC WKQ  SYWRNP YNA+RF  T VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   KF  + +FM  + + FT YGMM V LTP   +A+IV S F ++WNLFSGF++ R  +P+WWRWY W  PVAW LYGLV  Q GD+E+ +E
Sbjct: 1176 PTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME 1407          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.715e-71
Identity = 123/232 (53.02%), Postives = 152/232 (65.52%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVE 722
            PT+YSQ  LTQ  AC WKQ  SYWRNP YNA+RF  T VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   KF  + +FM  + + FT YGMM V LTP   +A+IV S F ++WNLFSGF++ R  +P+WWRWY W  PVAW LYGLV  Q GD+E+ +E
Sbjct: 1176 PTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME 1407          
The following BLAST results are available for this feature:
BLAST of CX290255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
AB39G_ARATH6.085e-8459.91ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH1.148e-8258.62ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR2_NICPL6.962e-8057.08Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_TOBAC1.502e-7454.82Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB40G_ARATH7.455e-7455.07ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_NICPL8.243e-7354.19Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR4_ORYSJ1.406e-7251.72Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR2_ORYSJ9.114e-7255.07Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR3_ORYSJ7.715e-7153.02Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI7.715e-7153.02Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC02022C01SK IF1 Citrus clementina cDNA clone C02022C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290255 ID=CX290255; Name=CX290255; organism=Citrus clementina; type=EST; length=730bp
GAATTCGGCACGAGGGATCTCTACTTCCCACCAAATACTCTCAACCATTT
TTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGGTCTTATTGGAG
AAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCTTGTCATTGCCA
TTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGACTTCCAAACAA
CAAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTTGTATTTTCCT
TGGAACCAGCAATGCCATATCCGTGATACCCGTTATCTGCGTTGAGAGAA
CAGTATACTACCGTGAAAGAGCCGCAGGGATGTTTGCTGCAATGCCTTAT
GCACTTGCTCAAGTAGCCGTAGAGATAATATATGTATCAGTTCAAAGTGT
CGTGTATGTTCTTATCCTTTACGCGATGATTGGATTCAAGTGGGAGCTGG
GAAAATTCTGCTTGTTCTTCTACTTCATGTGGGCGTCTTTTATCATTTTC
ACATTGTACGGAATGATGATTGTCGCATTGACTCCTGGCCAGCAAGTTGC
TACCATTGTCTTGTCCTTCTTCCTTAGTGTATGGAACTTGTTCTCCGGTT
TCCTCGTTGCCAGATCGGATATTCCTGTCTGGTGGAGGTGGTACTACTGG
CTTTCTCCGGTGGCTTGGAATCTGTATGGCCTTGTGACTTGTCAAGTTGG
TGACTTAGAGTCACTTGTGGAGATTCCTGA
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