CX290257

Overview
NameCX290257
Unique NameCX290257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290257_ssr393 microsatellite CX290257_ssr393:393..407. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 399.823 bits (1026), Expect = 7.984e-111
Identity = 198/246 (80.49%), Postives = 218/246 (88.62%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLASS 738
            VAD+DLSS+R+VLSGAAPLGKELE+ALR+R+PQA+LGQGYGMTEAGPVLSMCLGFAKQPF TKSGSCGTVVRNAELKV+DPETG SL +NQPGEICIRG QIMKGYLND  ATA+TID EGWLHT                RVKE+IK+KGFQVPPAE+E LL+SHPSIADAAVVPQKD  AGEVPVAFVVRSNGF+LTEEA+KE+IA QVVFYKRLHK+YFVHAIPKSPSGKILRKDLRAKL ++
Sbjct:  312 VADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTEAGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETA 557          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 379.022 bits (972), Expect = 1.458e-104
Identity = 187/245 (76.33%), Postives = 213/245 (86.94%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLAS 735
            V  +DLSS+R+VLSGAAPLGKELEDALR+R+PQAI GQGYGMTEAGPVLSMC  FAK+P P KSGSCGTVVRNAELKV+DP+TG SL  N PGEICIRGPQIMKGYLNDPEATAATIDVEGWLHT                RVKE+IKFKGFQVPPAE+E+LL++HPSIADAAVVPQKD+VAGEVPVAFVVR+   ++TEE+IKE+I+ QVVFYKRLHK++F+HAIPKS SGKILR++LRAKLA+
Sbjct:  324 VERHDLSSIRIVLSGAAPLGKELEDALRARLPQAIFGQGYGMTEAGPVLSMCPAFAKEPTPAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPVAFVVRAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELRAKLAA 568          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.509e-101
Identity = 186/243 (76.54%), Postives = 207/243 (85.19%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKL 729
            V  YDLSSVR VLSGAAPLGKEL+D+LR R+PQAILGQGYGMTEAGPVLSM LGFAK+P PTKSGSCGTVVRNAELKV+  ET  SL +NQPGEICIRG QIMK YLNDPEAT+ATID EGWLHT                R+KE+IKFKGFQVPPAE+E+LL++H SIADAAVVPQ DEVAGEVPVAFVVRSNG ++TEE +KEY+A QVVFYKRLHK++FV +IPKSPSGKILRKDL+AKL
Sbjct:  318 VNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKL 560          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.845e-99
Identity = 174/246 (70.73%), Postives = 208/246 (84.55%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLASS 738
            V +YDLSSVR V+SGAAPLGKELEDA+R++ P A LGQGYGMTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DPETG+SLP N PGEICIRG QIMKGYLNDPEATA TID EGWLHT                R+KE+IK+KGFQV PAE+EALLL+HP I+DAAVVP KDE AGEVPVAFVV+SNG  +TE+ IK++I+ QV+FYKR+++++FV AIPK+PSGKILRKDLRA+LA++
Sbjct:  303 VDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPETGSSLPRNHPGEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPCISDAAVVPMKDEAAGEVPVAFVVKSNGHNITEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLRARLAAA 548          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.409e-99
Identity = 176/245 (71.84%), Postives = 209/245 (85.31%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLAS 735
            V+ YD+SSVR+++SGAAPLGKELEDALR R P+AI GQGYGMTEAGPVL+M L FAK PFP KSGSCGTVVRNA++K++D ETG SLPHNQ GEICIRGP+IMKGY+NDPE+TAATID EGWLHT                RVKEIIK+KGFQV PAE+EALL++HPSIADAAVVPQK E AGEVPVAFVV+S+  E++E+ IKE++A QV+FYK++H++YFV AIPKSPSGKILRKDLR++LA+
Sbjct:  294 VSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVKSS--EISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAA 536          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.147e-99
Identity = 174/248 (70.16%), Postives = 205/248 (82.66%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLASSCP 744
            V  YDLSSVR V+SGAAPLGKELEDA+R++ P A LGQGYGMTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQPGEICIRG QIMKGYLNDPEAT  TID EGWLHT                R+KE+IK+KGFQV PAEIEALLL+HP+I+DAAVVP KDE AGEVPVAFVVRSNG  +TE+ +K++I+ QV+FYKR+ +++FV  +PKSPSGKILRKDLRA+LA+  P
Sbjct:  299 VDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRARLAAGVP 546          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.196e-98
Identity = 175/248 (70.56%), Postives = 206/248 (83.06%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLASSCP 744
            V DYDLSSVR V+SGAAPLGKELED +R++ P A LGQGYGMTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQ GEICIRG QIMKGYLNDPEATA TID EGWL+T                R+KE+IK+KGFQV PAE+EALLL+HP+I+DAAVVP KDE AGEVPVAFVVRSNG  +TE+ +K++I+ QV+FYKR+ +++FV AIPKSPSGKILRKDLRAKLA+  P
Sbjct:  294 VDDYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQSGEICIRGDQIMKGYLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAKLAAGLP 541          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.322e-97
Identity = 175/245 (71.43%), Postives = 203/245 (82.86%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLAS 735
            V  YDLSSVR V+SGAAPLGKELEDA+R++ P A LGQGYGMTEAGPVL+MCL FAK+P+  KSG+CGTVVRNAE+K++DPET ASLP NQ GEICIRG QIMKGYLNDPE+T  TID EGWLHT                R+KEIIK+KGFQV PAE+EALLL+HP+I+DAAVVP  DE AGEVPVAFVVR+NGF  TEE IK++++ QVVFYKR+ +++FV AIPKSPSGKILRKDLRAK+AS
Sbjct:  295 VDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRAKIAS 539          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.945e-97
Identity = 170/245 (69.39%), Postives = 204/245 (83.27%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLAS 735
            V +YDLSSVR V+SGAAPLGKELEDA+R++ P A LGQGYGMTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQPGEICIRG QIMKGYLNDPEATA TI+ EGWLHT                R+KE+IK+KGFQV PAE+EALL++HP I+DAAVVP  DE AGEVPVAFVVRSNG  +TE+ +K++I+ QV+FYKR+ +++FV  +PKSPSGKILRKDLRA+LA+
Sbjct:  297 VHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAA 541          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.945e-97
Identity = 170/245 (69.39%), Postives = 204/245 (83.27%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLAS 735
            V +YDLSSVR V+SGAAPLGKELEDA+R++ P A LGQGYGMTEAGPVL+MCL FAK+PF  KSG+CGTVVRNAE+K++DP+TG SLP NQPGEICIRG QIMKGYLNDPEATA TI+ EGWLHT                R+KE+IK+KGFQV PAE+EALL++HP I+DAAVVP  DE AGEVPVAFVVRSNG  +TE+ +K++I+ QV+FYKR+ +++FV  +PKSPSGKILRKDLRA+LA+
Sbjct:  297 VDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAA 541          
The following BLAST results are available for this feature:
BLAST of CX290257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
4CL2_SOYBN7.984e-11180.494-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL2_ORYSJ1.458e-10476.33Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL3_ARATH1.509e-10176.544-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL_VANPL1.845e-9970.734-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL_PINTA2.409e-9971.844-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL1_TOBAC3.147e-9970.164-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL2_TOBAC1.196e-9870.564-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL2_PETCR1.322e-9771.434-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_SOLTU2.945e-9769.394-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU2.945e-9769.394-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02022C03SK IF1 Citrus clementina cDNA clone C02022C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290257 ID=CX290257; Name=CX290257; organism=Citrus clementina; type=EST; length=746bp
GTGGCGGATTATGACCTGAGCTCGGTCAGGGTGGTGCTTTCCGGGGCGGC
GCCGCTGGGGAAGGAGCTTGAAGATGCTCTCCGAAGTAGAGTCCCTCAAG
CAATCTTGGGTCAGGGATATGGAATGACAGAGGCAGGGCCAGTGCTATCA
ATGTGCCTAGGATTTGCAAAGCAGCCATTTCCTACAAAGTCAGGATCATG
TGGCACCGTTGTTAGAAATGCTGAGCTCAAAGTTATTGACCCTGAAACTG
GTGCCTCCCTTCCCCACAATCAACCTGGCGAAATTTGCATCCGCGGCCCT
CAAATTATGAAAGGTTACTTGAATGATCCTGAGGCAACTGCGGCAACTAT
AGACGTTGAGGGTTGGCTTCATACTGGTGACATAGGCTTTGTTGATGATG
ATGATGAGGTTTTCATAGTCGATAGGGTCAAGGAAATCATCAAATTCAAA
GGATTCCAGGTGCCGCCGGCGGAGATTGAAGCCCTCCTTTTAAGCCACCC
ATCAATTGCAGATGCAGCTGTGGTTCCGCAAAAAGATGAAGTTGCAGGAG
AAGTTCCAGTTGCATTTGTAGTTCGATCAAATGGGTTTGAACTTACCGAG
GAAGCCATTAAAGAATACATAGCANAACAGGTAGTGTTTTACAAGAGACT
GCACAAGATTTATTTTGTTCATGCGATTCCAAAATCTCCTTCCGGTAAGA
TTTTGAGGAAAGATCTCAGAGCCAAGCTGGCCTCTTCATGCCCTTG
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