CX290259

Overview
NameCX290259
Unique NameCX290259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12520 contig Ccv1_Contig12520:365..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290259 vs. ExPASy Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 6.036e-103
Identity = 185/228 (81.14%), Postives = 204/228 (89.47%), Query Frame = 1 
Query:    1 LSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAMKKFEQAASKKSYKPNCQVFHLKPL 684
            LS+ LVLVGA LLIGYA+SG GIF   K  VS++ GD+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LLKEEETEAWGVEPYDIEDAD+ CKS V KG+VRVADIKFPLPYRAKSF LVIVSDALDYLSPKYLNKT+P+LARVASDGV++FAG PGQQRAKVAELSKFGRPAKMRS+SWW R+FVQT+LEEN+   KKFEQA SK  YKP CQVFHLKPL
Sbjct:   34 LSICLVLVGACLLIGYAYSGPGIFKSIKE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDAPSKKFEQAVSKGLYKPACQVFHLKPL 260
The following BLAST results are available for this feature:
BLAST of CX290259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3972_ARATH6.036e-10381.14Uncharacterized protein At3g49720 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02022C05SK IF1 Citrus clementina cDNA clone C02022C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290259 ID=CX290259; Name=CX290259; organism=Citrus clementina; type=EST; length=740bp
CTATCCGTCGGCCTTGTCCTCGTGGGAGCATTCCTTCTTATCGGCTATGC
TTTCAGCGGCTCGGGTATATTTGGAGGCGATAAAGCAGCTGTTAGTAGGA
TCGAAGGTGACTTTTCTTGCACATCAGAAATCCAAAGAGCTATACCTATT
CTAAAGAAAGCATACGGTGATAGCATGCACAAAGTTTTACACGTGGGTCC
TGATACCTGTTCAGTGGTCTCTACACTGTTGAAAGAAGAGGAAACCGAAG
CATGGGGTGTGGAACCGTATGACATAGAAGATGCAGATGCTAGGTGCAAG
AGCCTTGTGCATAAAGGCATTGTGCGTGTGGCTGATATCAAGTTCCCCTT
GCCTTACCGGGCAAAGTCCTTTCCTCTTGTTATTGTATCAGATGCTCTGG
ATTACCTGTCCCCAAAATACCTAAACAAGACTCTTCCAGATTTGGCAAGG
GTGGCTTCTGATGGTGTCCTTATTTTTGCAGGTTACCCTGGACAACAAAG
AGCTAAAGTTGCAGAATTATCCAAATTTGGACGGCCGGCAAAAATGAGAA
GCTCCTCTTGGTGGATACGCTATTTTGTTCAGACAAGCTTAGAAGAAAAT
GAACCTGCTATGAAGAAGTTTGAGCAGGCTGCATCCAAGAAGTCATACAA
GCCCAACTGTCAAGTTTTCCATCTCAAACCATTAAGATAAAAGATTTATT
TGGACACACCATTTTTTGCTCACCTTGAATAAGAACTCCC
back to top