CX290263

Overview
NameCX290263
Unique NameCX290263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:762..1504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 3.025e-94
Identity = 154/224 (68.75%), Postives = 174/224 (77.68%), Query Frame = 1
Query:   19 DGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 690
            D  CD  RKNAKVVTID YEDV  N E +LQKAVANQPVSVAIE GG AFQLY SGIFTG+CGT+LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                       VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  222 DERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.501e-93
Identity = 148/232 (63.79%), Postives = 179/232 (77.16%), Query Frame = 1
Query:   16 IDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 711
            +DG+CD  RKNAKVVTID YEDVP   E++L+KAVA+QP+S+AIE GG AFQLY+SGIF G CGT LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                        CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  229 VDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.567e-85
Identity = 141/237 (59.49%), Postives = 172/237 (72.57%), Query Frame = 1
Query:   19 DGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQGGSSSA 729
            +G CD YRKNAKVV ID YEDVP+N+EKALQKAVA+QPVS+A+E GG  FQ Y+SGIFTG+CGT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                        CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G  SS+
Sbjct:  111 NGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGGKKSSS 346          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.840e-83
Identity = 143/230 (62.17%), Postives = 165/230 (71.74%), Query Frame = 1
Query:   16 IDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 687
            +DG CD  R+NAKVV+ID +EDVP NDEK+LQKAVA+QPVSVAIE GG  FQLY SG+F+GRCGTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                             VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  234 VDGKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.615e-71
Identity = 127/233 (54.51%), Postives = 152/233 (65.24%), Query Frame = 1
Query:   10 TRIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 690
            T +DG C+  +++ KVV+ID +EDVP NDE +LQKAVA+QPVSVAI+ GG  FQLY+SG+FTGRCGT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  247 TAMDGKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 84/121 (69.42%), Postives = 101/121 (83.47%), Query Frame = 1
Query:   22 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 384
            G C+++ KN++VV+ID YEDVP  DE AL+KA++ QPVSVAIE GG  FQ Y+SGIFTG CGT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  239 GKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.232e-46
Identity = 85/122 (69.67%), Postives = 104/122 (85.25%), Query Frame = 1
Query:   19 DGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 384
            +G C++  KN++VVTID YEDVP  DE AL++AV+ QPVSVAI+ GG AFQ Y+SGIFTG+CGT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  193 NGKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGKCGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.515e-40
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   19 DGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 384
            DG+CD  ++NA  V+ID +E+VP NDE AL KAVANQPVSVAI+ GG  FQ Y  G+FTG CGT LDHGV  VGYGT  +G  YW VKNSWG  WGE GYIRMER ++    G CGIAMEASY
Sbjct:  219 DGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDK-EGLCGIAMEASY 340          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.290e-40
Identity = 77/123 (62.60%), Postives = 92/123 (74.80%), Query Frame = 1
Query:   19 DGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 384
            DG+C +   N+ VV+ID ++DVP N+E AL +AVANQP+SV+IE  G  FQ Y  G+FTGRCGT LDHGV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  222 DGTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
BLAST of CX290263 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.195e-39
Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   22 GSCDTYRKN-AKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 384
            G C+  + N  +VVTID YEDVP +DEK+L+KAVA+QPVSVAIE    AFQLY+SG+ TG CG SLDHGV  VGYG+ +G DYWI++NSWG +WG+ GY++++RN+     GKCGIAM  SY
Sbjct:  226 GLCNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTGTCGISLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPF-GKCGIAMMPSY 346          
The following BLAST results are available for this feature:
BLAST of CX290263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.025e-9468.75Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.501e-9363.79Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC2.567e-8559.49Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ1.840e-8362.17Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.615e-7154.51Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH1.377e-4669.42Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA5.232e-4669.67Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CYSEP_RICCO2.515e-4065.04Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CYSP_HEMSP4.290e-4062.60Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR1_ARATH6.195e-3960.66Probable cysteine proteinase At3g19400 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC02022C10SK IF1 Citrus clementina cDNA clone C02022C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290263 ID=CX290263; Name=CX290263; organism=Citrus clementina; type=EST; length=743bp
GAATTCGGCACGAGGATTGATGGTAGCTGTGACACATATCGGAAAAATGC
CAAAGTAGTTACAATTGATGACTATGAAGATGTTCCCCTAAATGACGAGA
AAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTGAGTGTTGCCATTGAA
GGAGGTGGCATGGCATTCCAGTTATATGAATCGGGTATATTTACGGGAAG
ATGTGGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAG
AAAATGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGG
GGAGAGGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCAC
GGGCAAGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCC
AAAATCCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCT
GCTGTGTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTG
TGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTG
AGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTAT
CCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCC
ATTGGGAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTC
ATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGC
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