CX290265

Overview
NameCX290265
Unique NameCX290265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig277 contig Ccv1_Contig277:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.815e-71
Identity = 127/156 (81.41%), Postives = 142/156 (91.03%), Query Frame = 2
Query:   17 WQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEARNLESV 484
            WQHL+T+PSFADAAMGRIAQ TKV AEGGYEKIFRQTFET PEEQL NS+ACYLSTSAGPVMG+LY+S+AKLA+CSDNPLSYK+  QTEWSYYKVVIPLHQL+AVNPS+S  NPAEKY+QVIS+DNHEFWFMGFLNY+GAV  LQ +L+A  L SV
Sbjct:  144 WQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQAGALRSV 299          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.344e-59
Identity = 105/150 (70.00%), Postives = 130/150 (86.67%), Query Frame = 2
Query:   17 WQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEA 466
            WQHLKT PS ADAA+ RIAQGTK+LAEGGYEK+F+QTF+ +P+E+L  +YACYLSTSAGPV+G++Y+ST KLAF SDNPLSYK   QT WSYYKVV+P +QL+AVNPS+SR N ++KY+QVISIDNHEFWFMGF+ Y  AV+ LQ A+++
Sbjct:  107 WQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.544e-52
Identity = 107/150 (71.33%), Postives = 116/150 (77.33%), Query Frame = 2
Query:   17 WQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSSGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGALEA 466
            WQH         AAMGRIAQ TKVLAEGGYEKIFRQTFETVPEEQLQNS+ACYLSTSAGPVMG+LYVSTAKLA+CSD  L              VVIPLHQL++VNPS S  NPAEKY+QVIS+D+HEFWFMGFLNY GAV  LQ  L+A
Sbjct:  103 WQHPLR------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL--------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTLQA 232          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 71/145 (48.97%), Postives = 100/145 (68.97%), Query Frame = 2
Query:   17 WQHLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWL 448
            W +LKT PS ++ A G++    K + +GG+E +FRQ F T P E L+ ++ACYLST+ GPV G +Y+S A++AFCSD PL + + SGQ  WSYY+VV+PL  +  VNP   +  P EKY+Q+ ++D H+FWFMGF+NY  A   L
Sbjct:  112 WHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHL 256          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.388e-32
Identity = 65/148 (43.92%), Postives = 103/148 (69.59%), Query Frame = 2
Query:   23 HLKTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKSS--GQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 460
            HLK SPS +DAAM R++QGTK++ EGG E++F++ F  +  E+L +S+ CY+ST++GPV G++Y+S  ++AFCSD  +   SS  G    +YYKVV+   ++ +++ S++   P+E+YV +++ D  EFWFMGF++Y  A   L  AL
Sbjct:   77 HLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.892e-29
Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = 2
Query:   29 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 460
            K  P   +    +++ G ++L  GG EKI+++ F+   EE+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G+    +YKV IPL ++  VN S +   P++KY++V+++D  +FWFMGFL+Y  A   L+ AL
Sbjct:   69 KLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.892e-29
Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = 2
Query:   29 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 460
            K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P++KY+++++IDN +FWFMGF++Y  A   L+ AL
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKAL 213          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 55/145 (37.93%), Postives = 93/145 (64.14%), Query Frame = 2
Query:   29 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 460
            K  P   +    +++ G K+L  GG EKI+++ F+   +E+L  +Y CYLST+ G + G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P+++Y++V+++DN++FWFMGF++Y  A   L+ AL
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205          
BLAST of CX290265 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.356e-27
Identity = 58/145 (40.00%), Postives = 90/145 (62.07%), Query Frame = 2
Query:   29 KTSPSFADAAMGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLQNSYACYLSTSAGPVMGILYVSTAKLAFCSDNPLSYKS-SGQTEWSYYKVVIPLHQLRAVNPSSSRNNPAEKYVQVISIDNHEFWFMGFLNYNGAVEWLQGAL 460
            K  P   +    +++ G ++L  GG EKIF++ F     E+L   Y CYLST+AGP+ G+L++S+ K+AFCS+  +   S  G     +YKV IPL ++  VN S +   P++KY++V+++D  +FWFMGFL+Y  A   L+ AL
Sbjct:   68 KIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212          
The following BLAST results are available for this feature:
BLAST of CX290265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEM_ARATH5.815e-7181.41GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH1.344e-5970.00GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH3.544e-5271.33Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML5_ARATH1.545e-3948.97GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH2.388e-3243.92GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML8_ARATH1.892e-2940.00Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH1.892e-2940.00GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH6.088e-2837.93GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.356e-2740.00GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionC02022C12SK IF1 Citrus clementina cDNA clone C02022C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290265 ID=CX290265; Name=CX290265; organism=Citrus clementina; type=EST; length=722bp
GAATTCGGCACGAGGCTGGCAGCATCTGAAAACAAGCCCGAGCTTTGCTG
ATGCTGCTATGGGAAGGATTGCACAGGGAACTAAGGTTCTGGCAGAAGGC
GGTTATGAAAAGATCTTTCGGCAAACTTTTGAGACAGTTCCTGAGGAGCA
ACTTCAGAACTCATATGCTTGTTACTTATCCACATCAGCTGGTCCAGTCA
TGGGAATCTTATATGTATCTACTGCGAAGCTGGCATTTTGTAGCGACAAC
CCGCTTTCCTATAAATCCAGTGGCCAAACTGAATGGAGCTATTATAAGGT
AGTTATCCCATTGCATCAGCTTAGAGCAGTTAATCCTTCATCAAGCAGAA
ACAATCCCGCTGAAAAATATGTTCAGGTTATCTCCATAGATAATCATGAG
TTTTGGTTCATGGGCTTCTTAAACTACAACGGTGCTGTGGAATGGCTACA
GGGAGCTTTGGAGGCTCGCAACCTAGAATCTGTGTGACTTGATTTGGCTT
GCGGTTTCACTCTATTGTCTGATGTTCCCCATGGAACCGTGAAATTTTCA
TAATGCATGTGTCTCCTCTGTGGGAACTAAAATTAGGTAAACAATAGAGA
TTATATTGTATCAGGGATATAGTAGAAAAATATGTTGACTTTTTTTTAGT
CCATGTGATTATTTTGCATGTTACAGCTTGTCAGGAAGCTTTATATTGTA
TCCAATCTGTTTCAAATGAGCT
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