CX290266

Overview
NameCX290266
Unique NameCX290266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig278 contig Ccv1_Contig278:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_TOBAC (Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.635e-119
Identity = 214/227 (94.27%), Postives = 225/227 (99.12%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLE+IK+LVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNL N++KMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEF+RICKDL+SIGDTVV+SVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRY+NSFT+ATPLSNTVTI
Sbjct:    1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLANMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA1_DAUCA (Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 8.741e-118
Identity = 210/227 (92.51%), Postives = 225/227 (99.12%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKV+++IK+LVNDANFDCSATGFSLQAMDSSHVALVA+LLRSEGFEHYRCDRNISMGMNL N++KMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVV+SVTKEGVKFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRYMNSFT+A+PLS+TVTI
Sbjct:    1 MLELRLVQGSLLKKVMDSIKDLVNDANFDCSATGFSLQAMDSSHVALVAVLLRSEGFEHYRCDRNISMGMNLGNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYMNSFTKASPLSSTVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_CATRO (Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 5.666e-117
Identity = 210/227 (92.51%), Postives = 223/227 (98.24%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLE++K+LV DANFDCSA+GFSLQAMDSSHVALVALLLRSEGFEHYRCDRN SMGMNLNN++KMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKI+DFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVV+SVTKEGVKFSTRGDIGTANIV RQNTTVDKP+EATIIEM+EPVSLTFALRY+NSFT+ATPLSN VTI
Sbjct:    1 MLELRLVQGSLLKKVLESLKDLVTDANFDCSASGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNPSMGMNLNNMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPDEATIIEMNEPVSLTFALRYLNSFTKATPLSNNVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_POPNI (Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 2.812e-116
Identity = 208/227 (91.63%), Postives = 223/227 (98.24%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLE+IK+LVNDANFD S++GFSLQ+MDSSHVALVALLL+SEGFEHYRCDRN SMGMNL N+SKMLKCAGNDDIIT+K DDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIV+MPSAEFARICKDLASIGDTVV+SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPE+AT+IEM+EPVS+TFALRYMNSFT+ATPLSNTVTI
Sbjct:    1 MLELRLVQGSLLKKVLESIKDLVNDANFDFSSSGFSLQSMDSSHVALVALLLKSEGFEHYRCDRNTSMGMNLGNMSKMLKCAGNDDIITIKGDDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVKMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEDATVIEMNEPVSMTFALRYMNSFTKATPLSNTVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_PEA (Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 3.672e-116
Identity = 206/227 (90.75%), Postives = 225/227 (99.12%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLE+IKELVNDANFDCS+TGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN+SMGMNLNN++KMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKI+DFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDL+SIGDTVV++V+KEGVKFST+GDIG+ANIV RQNTTVDKPEEAT+IEM+EPV+L FALRYMNSFT+ATPLS++VTI
Sbjct:    1 MLELRLVQGSLLKKVLESIKELVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVIAVSKEGVKFSTKGDIGSANIVCRQNTTVDKPEEATVIEMNEPVALQFALRYMNSFTKATPLSSSVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA2_ARATH (Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana GN=At2g29570 PE=1 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.823e-115
Identity = 205/227 (90.31%), Postives = 221/227 (97.36%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLEA+K+LVNDANFDCS TGFSLQAMDSSHVALV+LLLRSEGFEHYRCDRN+SMGMNL N+SKMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVV+SVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS TVTI
Sbjct:    1 MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA1_ARATH (Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana GN=PCNA PE=1 SV=2)

HSP 1 Score: 412.149 bits (1058), Expect = 1.543e-114
Identity = 204/227 (89.87%), Postives = 221/227 (97.36%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLE+IK+LVNDANFDCS+TGFSLQAMDSSHVALV+LLLRSEGFEHYRCDRN+SMGMNL N+SKMLKCAGNDDIIT+KADDG DTVTFMFESPTQDKIADFEMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVV+SVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM EPVSL+FALRYMNSFT+ATPLS+TVTI
Sbjct:    1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_BRANA (Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.306e-113
Identity = 202/227 (88.99%), Postives = 220/227 (96.92%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLE+IK+LVNDANFDCS TGFSLQAMDSSHVALV+LLLRSEGFEHYRCDRN+SMGMNL N+SKMLKCAGNDDIIT+KADDG DTVTFMFESP QDKIADFEMKLMDIDSEHLGIP+AEYH+IVRMPS EF+RICKDL++IGDTVV+SVTKEGVKFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS+TVTI
Sbjct:    1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPKQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSTIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSDTVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_ORYSJ (Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica GN=Os02g0805200 PE=2 SV=2)

HSP 1 Score: 405.216 bits (1040), Expect = 1.886e-112
Identity = 201/227 (88.55%), Postives = 217/227 (95.59%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQGSLLKKVLEAI+ELV DANFDCS TGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN+SMGMNLNN++KML+CAGNDDIIT+KADDGSDTVTFMFESP QDKIADFEMKLMDIDSEHLGIP++EY AIVRMPS+EF+RICKDL+SIGDTV++SVTKEGVKFST GDIGTANIV RQN TVDKPE+ATIIEM EPVSLTFALRYMNSFT+A+PLS  VTI
Sbjct:    1 MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTI 227
[Close]
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA2_DAUCA (Proliferating cell nuclear antigen large form OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.723e-111
Identity = 198/227 (87.22%), Postives = 217/227 (95.59%), Query Frame = 3 
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            MLELRLVQG LLKKVLE+IK+LVNDANFDCSA+GFSLQAMDSSHVALVA+LLRSEGFEHYRCDRNISMGMNL N++KML+CAGNDDI+T+KADD  D +TFMFESPTQDKI+DFEMKLMDIDSEHLGIPE+EY AIVRMPSAEFARICKDL++IGDTVV+SVTKEGVKFSTRGDIGTANIV RQNT+VDKPE+ATIIEM E VSLTFALRYMNSFT+ATPL+N VTI
Sbjct:    1 MLELRLVQGGLLKKVLESIKDLVNDANFDCSASGFSLQAMDSSHVALVAVLLRSEGFEHYRCDRNISMGMNLGNMAKMLRCAGNDDIVTMKADDDGDVITFMFESPTQDKISDFEMKLMDIDSEHLGIPESEYEAIVRMPSAEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTSVDKPEDATIIEMQETVSLTFALRYMNSFTKATPLANQVTI 227
The following BLAST results are available for this feature:
BLAST of CX290266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PCNA_TOBAC4.635e-11994.27Proliferating cell nuclear antigen OS=Nicotiana ta... [more]
PCNA1_DAUCA8.741e-11892.51Proliferating cell nuclear antigen OS=Daucus carot... [more]
PCNA_CATRO5.666e-11792.51Proliferating cell nuclear antigen OS=Catharanthus... [more]
PCNA_POPNI2.812e-11691.63Proliferating cell nuclear antigen OS=Populus nigr... [more]
PCNA_PEA3.672e-11690.75Proliferating cell nuclear antigen OS=Pisum sativu... [more]
PCNA2_ARATH1.823e-11590.31Proliferating cell nuclear antigen 2 OS=Arabidopsi... [more]
PCNA1_ARATH1.543e-11489.87Proliferating cellular nuclear antigen 1 OS=Arabid... [more]
PCNA_BRANA1.306e-11388.99Proliferating cell nuclear antigen OS=Brassica nap... [more]
PCNA_ORYSJ1.886e-11288.55Proliferating cell nuclear antigen OS=Oryza sativa... [more]
PCNA2_DAUCA2.723e-11187.22Proliferating cell nuclear antigen large form OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC02022D01SK IF1 Citrus clementina cDNA clone C02022D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290266 ID=CX290266; Name=CX290266; organism=Citrus clementina; type=EST; length=743bp
GAATTCGGCACGAGGGATCTTTCAAACCCTAACCCTAATTTCCCAAGAAA
CTCGCAGCAAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCCTTCTCAA
GAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAACTTTGACT
GCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCACGTGGCG
CTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACCGCTGTGA
CCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAGATGCTTA
AGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGACGGCAGC
GATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGATTGCTGA
TTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGTATACCGG
AGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTTTGCTAGA
ATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTCGTGGTTTCTGTCAC
AAAGGAAGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACTGCTAATA
TTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAGAAGCAACAATA
ATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGATACATGAA
TTCATTCACAAGGGCTACTCCACTGTCGAATACTGTTACTATC
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