CX290270

Overview
NameCX290270
Unique NameCX290270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290270_ssr97 microsatellite CX290270_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
CX290270_ssr157 microsatellite CX290270_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15280 contig Ccv1_Contig15280:23..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.826e-76
Identity = 143/185 (77.30%), Postives = 156/185 (84.32%), Query Frame = 2
Query:   95 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSV+ELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHFKE
Sbjct:   13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKE 197          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.526e-76
Identity = 140/185 (75.68%), Postives = 157/185 (84.86%), Query Frame = 2
Query:   95 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            LKK+KR                      RKLI+NR KQY+KEY E+++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHFKE
Sbjct:   15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKE 199          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 8.524e-76
Identity = 138/157 (87.90%), Postives = 150/157 (95.54%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLI+ R +QYAKEY E+  ELIRLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHFKE
Sbjct:   41 RKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKE 197          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 105/157 (66.88%), Postives = 127/157 (80.89%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKE
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKE 202          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  FKE
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKE 225          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 105/157 (66.88%), Postives = 127/157 (80.89%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKE
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKE 202          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 105/157 (66.88%), Postives = 127/157 (80.89%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKE
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKE 203          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 105/157 (66.88%), Postives = 127/157 (80.89%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKE
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKE 203          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 5.744e-56
Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  FKE
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKE 215          
BLAST of CX290270 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.671e-55
Identity = 104/157 (66.24%), Postives = 130/157 (82.80%), Query Frame = 2
Query:  179 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKE 649
            R +I+ R + Y KEY + ++E IRL+R AK  G F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVGP+FK+
Sbjct:   46 RAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQ 202          
The following BLAST results are available for this feature:
BLAST of CX290270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH3.826e-7677.3060S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH6.526e-7675.6860S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH8.524e-7687.9060S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_PONAB3.367e-5666.8860S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE3.367e-5667.5260S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA3.367e-5666.8860S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN3.367e-5666.8860S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN3.367e-5666.8860S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT5.744e-5666.8860S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_NEUCR1.671e-5566.2460S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC02022D05SK IF1 Citrus clementina cDNA clone C02022D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290270 ID=CX290270; Name=CX290270; organism=Citrus clementina; type=EST; length=649bp
GCCAGAACGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAAGAACAA
AAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAGTGTTGAAG
AAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAAGCAGGAGCTGGA
AGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTACAACAGAA
CCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAACTCATTCGT
TTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAACCCAGAAGC
TAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGCTGTTGATCCAA
AGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTTTTAATGGT
GTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCTGCACAGAGTTGA
GCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAACTGA
TTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCTTTGACC
GACAATTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATTATCTGCAT
GGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTCAAGGAG
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