CX290272

Overview
NameCX290272
Unique NameCX290272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTC_MAIZE (Transketolase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 7.584e-109
Identity = 195/229 (85.15%), Postives = 205/229 (89.52%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +MTLLKMFGDFQKDT EERNVRFGVREHGMGAICNGIALHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIEHL SFRAMPNILMLRPADGNETAGAYKVAV NRKRPSILALSRQKLPHL GTSI+GVEKG Y ISDNS+GNKPD+I++GTGS            RK GK VRVVSFVSWELFDEQSD YKESVLPAAV+AR+SIE
Sbjct:  397 NMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKGGYTISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIE 625          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 6.420e-108
Identity = 196/229 (85.59%), Postives = 205/229 (89.52%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +MTLLK  GDFQK+TPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAA+RISALCEA VIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV N KRPS+LALSRQKLP L GTSI+GVEKG Y+ISDNSSGNKPDVILIGTGS            RK GK VRVVSFVSWELFDEQS  YKESVLP++V+ARVSIE
Sbjct:  240 NMTLLKSSGDFQKNTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAMRISALCEARVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVQNLKRPSVLALSRQKLPQLPGTSIEGVEKGGYVISDNSSGNKPDVILIGTGSELEIAAKAGEVLRKEGKGVRVVSFVSWELFDEQSKEYKESVLPSSVTARVSIE 468          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.933e-104
Identity = 190/229 (82.97%), Postives = 201/229 (87.77%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +MTLLKMFGDFQK+TPEERN+RFGVREHGMGAICNGIALHS GLIPYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILM RPADGNETAGAYKVAV  RK PSILALSRQKLP LAGTSI+G  KG YI+SDNSSGNKPDVILIGTGS            +K GK VRVVSFV WEL+DEQS  YKESVLP++V+ARVSIE
Sbjct:  462 NMTLLKMFGDFQKNTPEERNLRFGVREHGMGAICNGIALHSLGLIPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMFRPADGNETAGAYKVAVLKRKTPSILALSRQKLPQLAGTSIEGAAKGGYIVSDNSSGNKPDVILIGTGSELEIAVKAAEELKKEGKTVRVVSFVCWELYDEQSAEYKESVLPSSVTARVSIE 690          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.612e-98
Identity = 179/229 (78.17%), Postives = 196/229 (85.59%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +MTLLKMFGDF++   ++   RFGVREHGMGAICNGI LHSPG +PYCATFFVFTDYMR A+RISAL EAGVIYVMTHDSIGLGEDGPTHQPIE L+ F AMPNILMLRPADGNETAG+YKVAV NRK PSILALSR+KLP+L GTSI+GVEKG Y I+DNSSGNKPDVILIGTGS            RK GKAVRVVSFVSWELF++QSD YKESVLP+ V+ARVSIE
Sbjct:  462 NMTLLKMFGDFRRTHRKKETFRFGVREHGMGAICNGICLHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEALSKFPAMPNILMLRPADGNETAGSYKVAVENRKTPSILALSRKKLPNLPGTSIEGVEKGGYTITDNSSGNKPDVILIGTGSELEIAAKAGDELRKEGKAVRVVSFVSWELFEKQSDEYKESVLPSDVTARVSIE 690          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.100e-91
Identity = 166/231 (71.86%), Postives = 190/231 (82.25%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSG--NKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +M  LK  GDFQK +P ERNV+FG REH MG+ICNG+ALHSPGL+PYCAT+FVFTDYMRAA+RISAL +A V+Y+MTHDSIGLGEDGPTHQP+EHLASFRAMPNIL LRPADGNETAGAY+ AV N +RPSIL L+RQKLP L GTSI+GV KG Y+ISDNS G  +KPDVILIGTGS            RK GK VRVVS V WELF EQS+ Y+E+VLP+ V+ARVS+E
Sbjct:  395 NMAFLKNSGDFQKKSPGERNVKFGAREHAMGSICNGLALHSPGLLPYCATYFVFTDYMRAAMRISALSKARVLYIMTHDSIGLGEDGPTHQPVEHLASFRAMPNILTLRPADGNETAGAYRAAVQNGERPSILVLARQKLPQLPGTSIEGVSKGGYVISDNSRGGNSKPDVILIGTGSELEIAARAGDELRKEGKKVRVVSLVCWELFAEQSEKYRETVLPSGVTARVSVE 625          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.437e-91
Identity = 166/230 (72.17%), Postives = 190/230 (82.61%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNS-SGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +M  LK  GDFQK+TP  RN++FG REHGMGAICNG+ALHSPGL+P+ AT+FVFTDYMRAAIRI+AL +A V+Y+MTHDSIGLGEDGPTHQP+EHLASFRAMPNIL+LRPADGNETAGAYKVAV N  RPSIL+LSRQKLP L GTS++GV +G Y+ISDNS  G KP+VIL+GTGS            RK GK VRVVS VSWELF EQS  YKE VLP+ V+ARVS+E
Sbjct:  399 NMAFLKSSGDFQKETPTGRNLKFGAREHGMGAICNGVALHSPGLVPFSATYFVFTDYMRAAIRIAALSKARVVYIMTHDSIGLGEDGPTHQPVEHLASFRAMPNILVLRPADGNETAGAYKVAVENAGRPSILSLSRQKLPQLPGTSVEGVGRGGYVISDNSKDGEKPEVILMGTGSELEIAARAGEELRKEGKKVRVVSLVSWELFGEQSKEYKEMVLPSEVTARVSVE 628          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_ANASP (Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.921e-74
Identity = 141/231 (61.04%), Postives = 172/231 (74.46%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAV--ANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            ++T +K  GDFQK   +  N+ FGVREHGMGAICNGIALH  GLIPY ATF +F+DYMRA IR+SAL +AG I+VMTHDSIG GEDGPTHQPIE LAS RA+PN+ ++RPADGNET+GAYKVA+  A    P++LA +RQ +P+LAGTSID V KG YI+ D  +   PD+ILIGTGS            +  GK VRVVS  +W+LFD Q  AYKESVLP AV+ R+++E
Sbjct:  390 NLTEIKGKGDFQKGQYQNPNIHFGVREHGMGAICNGIALHGSGLIPYGATFLIFSDYMRAPIRLSALSQAGSIWVMTHDSIGQGEDGPTHQPIETLASLRAIPNLTVIRPADGNETSGAYKVAIERAKNNAPTLLAFTRQNVPNLAGTSIDDVAKGGYIVVD--TDGTPDLILIGTGSELSLCVTAAEKLKAEGKKVRVVSLAAWDLFDAQDAAYKESVLPKAVTKRLAVE 618          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_AQUAE (Transketolase OS=Aquifex aeolicus GN=tkt PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.167e-55
Identity = 110/230 (47.83%), Postives = 152/230 (66.09%), Query Frame = 1
Query:   70 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            T+LK +GDF+ DTP  RNV +GVREH MG I NG+A H  G++PY  TF +F++YMR AIR +AL    VI+V +HDSIGLGEDGPTHQP+E L S R++PN+ ++RPAD NE   A+++A+  +  P+ + L+RQK+  +  +   S +GV KGAY+I+D     KPDV++I TGS             + G   RVV+    ELF+EQ + YK  VLP  V+ RV++E
Sbjct:  410 TVLKKYGDFEADTPTGRNVHYGVREHAMGTILNGMAYHG-GILPYGGTFLIFSEYMRPAIRTAALANLQVIFVYSHDSIGLGEDGPTHQPVEQLWSLRSIPNLWVVRPADANEVKYAWEIALKRKNGPTAIILTRQKVKTIDRSKYASPEGVRKGAYVIADTE--GKPDVVIIATGSEVQVALGAKEILEQKGIKTRVVNMACCELFEEQPEEYKREVLPPEVTKRVAVE 636          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_BACHD (Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.835e-54
Identity = 114/230 (49.57%), Postives = 153/230 (66.52%), Query Frame = 1
Query:   70 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            TL+K   +F +D    RNV FGVRE  MGA  NG+ALH  GL  + ATFFVF+DY+R AIR++AL +  VIYV THDSI +GEDGPTH+P+E LAS RAMP + ++RPADGNE+  A+K+A+ ++ +P+ L LSRQ LP L G    + DGV KGAY+++   +    D++L+ +GS             K G    VVS  SW+ F+ QS  YKE VLP+ V+AR++IE
Sbjct:  386 TLIKGEANFSRDDYSGRNVWFGVREFAMGAAMNGMALHG-GLKVFGATFFVFSDYLRPAIRLAALMQLPVIYVFTHDSIAVGEDGPTHEPVEQLASLRAMPGLSVIRPADGNESVAAWKLALESKDQPTALVLSRQNLPTLEGAVDRAYDGVSKGAYVLA--PANGSADLLLLASGSEVSLAVNAKEALEKEGIHAAVVSMPSWDRFEAQSAEYKEEVLPSDVTARLAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STRP8 (Transketolase OS=Streptococcus pyogenes serotype M18 GN=tkt PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.189e-53
Identity = 119/230 (51.74%), Postives = 151/230 (65.65%), Query Frame = 1
Query:   70 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            T++K   DFQ    E RN+ FGVRE  M A  NGIALH  G   Y  TFFVF++Y+  A+R++AL     +YVMTHDSI +GEDGPTH+PIE LAS R+MPN+ ++RPADGNET  A+K A+A   RP++L L+RQ LP L GT   + DG+ KGAYI+S+  +    D I+I TGS               G  VRVVS  S  +FDEQS  YKES+LPAAV+ R++IE
Sbjct:  453 TMVKAETDFQPGHYEGRNIWFGVREFAMAAAMNGIALHG-GTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASVRSMPNLNVIRPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSE--AKGDLDGIIIATGSEVKLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIE 679          
The following BLAST results are available for this feature:
BLAST of CX290272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
TKTC_MAIZE7.584e-10985.15Transketolase, chloroplastic OS=Zea mays PE=1 SV=1[more]
TKTC_CRAPL6.420e-10885.59Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKTC_SOLTU1.933e-10482.97Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKTC_SPIOL4.612e-9878.17Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKT7_CRAPL1.100e-9171.86Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTA_CRAPL1.437e-9172.17Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
TKT_ANASP7.921e-7461.04Transketolase OS=Anabaena sp. (strain PCC 7120) GN... [more]
TKT_AQUAE2.167e-5547.83Transketolase OS=Aquifex aeolicus GN=tkt PE=3 SV=1[more]
TKT_BACHD1.835e-5449.57Transketolase OS=Bacillus halodurans GN=tkt PE=3 S... [more]
TKT_STRP81.189e-5351.74Transketolase OS=Streptococcus pyogenes serotype M... [more]

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Properties
Property NameValue
Genbank descriptionC02022D07SK IF1 Citrus clementina cDNA clone C02022D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290272 ID=CX290272; Name=CX290272; organism=Citrus clementina; type=EST; length=751bp
GAATTCGGCACGAGGAAAGACTCTCCCTGGTCTTCTTGGTGGTAGTGCAG
ACCTTGCTTCTTCCACATGACCCTACTAAAAATGTTTGGGGACTTCCAAA
AGGACACCCCAGAGGAACGTAATGTTCGGTTTGGTGTTAGGGAGCATGGG
ATGGGAGCCATCTGCAATGGCATTGCCCTGCACAGCCCTGGCCTAATTCC
TTACTGTGCTACTTTCTTTGTTTTCACCGACTACATGAGAGCTGCTATAA
GGATATCTGCTCTGTGTGAAGCTGGCGTTATCTATGTTATGACCCATGAT
TCTATTGGTCTTGGAGAAGATGGACCTACCCATCAGCCAATTGAACACTT
GGCAAGTTTCCGTGCCATGCCCAACATTTTGATGCTCCGTCCGGCTGACG
GTAATGAAACTGCTGGTGCATACAAGGTTGCTGTTGCCAACAGGAAGAGA
CCGTCCATCCTTGCCCTTTCCCGGCAAAAGCTTCCCCACCTTGCTGGAAC
TTCCATTGATGGTGTTGAAAAGGGTGCCTACATAATTTCGGACAATTCTT
CTGGTAACAAACCTGATGTCATTTTGATTGGAACTGGTTCTGAATTGGAA
ATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCTGTAAG
AGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCT
ACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAA
G
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