CX290273

Overview
NameCX290273
Unique NameCX290273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290273_ssr154 microsatellite CX290273_ssr154:154..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig279 contig Ccv1_Contig279:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.480e-48
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 370
            GDMEFKQNKFL  EKQIVTANPDIN VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +  ES +SAVCERVL+RCLAPST GGEGCDNMTM++VQFKKPI
Sbjct:  232 GDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFKKPI 333          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.348e-48
Identity = 86/102 (84.31%), Postives = 98/102 (96.08%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 370
            GD+EFKQNKFLS +KQ++TANPDIN+VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +++ES +SAVCERVL+RCLAPST GGEGCDNMTMI+VQFKKPI
Sbjct:  232 GDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPI 333          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.914e-47
Identity = 83/101 (82.18%), Postives = 98/101 (97.03%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 367
            GDMEFKQNKFL +EKQIVTA+PD+N+VELCDDDDF+VLACDGIWDCM+SQQLVDFIHEQL+SE+K+S VCE+VL+RCLAP+T+GGEGCDNMTMI+V+FK P
Sbjct:  232 GDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFKNP 332          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.342e-45
Identity = 80/101 (79.21%), Postives = 96/101 (95.05%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 367
            GDMEFKQNKFL +EKQ+VTA+PDIN+++LCDDDDF+V+ACDGIWDCMSSQ+LVDFIHEQL SE+K+S VCE+V++RCLAP TA GEGCDNMT+I+VQFKKP
Sbjct:  232 GDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFKKP 332          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.496e-37
Identity = 67/101 (66.34%), Postives = 92/101 (91.09%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 367
            GDME KQN+FL AE+QIVTA P++N+V+L +DD+F+VLACDGIWDCMSSQ++VDF+H+++++E  +SAVCE++L+ CLAP  +GG+GCDNMT+IIV+FKKP
Sbjct:  231 GDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAP-VSGGDGCDNMTVIIVKFKKP 330          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.112e-24
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKKPI 370
            GD  +K N  L AE+Q+++A PDI  + +  +D+F+VLACDGIW+ MSS+++V+F+  +L    K+S +CE + + CLAP+T G G GCDNMT +IVQFKK +
Sbjct:  466 GDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFKKKL 568          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   20 FSCLNASVSVFS*FAGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAP-STAGGEGCDNMTMIIVQF 358
            F  +N S+++ S   GD E+K++  L  EKQIVTA PD+    +  DD+F++LACDGIWDC SSQQ+V+F+   + +   +  +CE +++RC+A  S + G GCDNMT+ IV F
Sbjct:  179 FGRVNGSLAL-SRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAF 291          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 361
            GD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  402 GDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 507          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 361
            GD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  401 GDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 506          
BLAST of CX290273 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = 2
Query:   65 GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 361
            GD  +K+NK L  E+Q+++A PDI  + L DD +F+V+ACDGIW+ MSSQ+++DFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  399 GDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 504          
The following BLAST results are available for this feature:
BLAST of CX290273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
P2C11_ORYSJ5.480e-4886.27Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C58_ORYSJ9.348e-4884.31Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C60_ARATH7.914e-4782.18Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH4.342e-4579.21Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C70_ORYSJ1.496e-3766.34Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME1.112e-2449.51Probable protein phosphatase CG10417 OS=Drosophila... [more]
PP2C2_SCHPO1.775e-2245.61Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PPM1G_MACFA3.955e-2248.11Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN3.955e-2248.11Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN5.165e-2247.17Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022D08SK IF1 Citrus clementina cDNA clone C02022D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290273 ID=CX290273; Name=CX290273; organism=Citrus clementina; type=EST; length=636bp
GAATTCGGCACGAGGTACATTTTCTTGTTTAAATGCTTCAGTTTCAGTGT
TCTCTTAATTTGCAGGTGACATGGAATTCAAGCAGAACAAATTTTTGTCT
GCTGAAAAGCAAATTGTTACTGCCAATCCAGATATAAACTCTGTTGAGCT
GTGTGATGATGATGATTTCGTTGTGCTGGCGTGTGATGGAATCTGGGATT
GCATGTCAAGCCAGCAATTAGTAGATTTTATTCATGAACAACTACATTCG
GAAAGCAAGATTTCTGCTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGC
GCCATCAACAGCAGGAGGTGAGGGATGTGACAACATGACCATGATCATAG
TGCAGTTCAAGAAACCAATCCAGTCCACTTCCTCCACTTCTAGTCAACAG
TCCTTGGAATTCAAATCAGATGACTCAAGTCCACTACCCGAGGAAAGTGA
ATCAATGTAGCCGCTGTAATGTACCACTATGTCAGGCTGCACGATTCTGG
TTCCTTTGCCCATAAGACAATGCAAGAATCCCTTTCGTTGAAAAATTGGG
ATCAAAGACGTGTGTACTTGTAGATGGTCCAGCACTGAGAAAAAAGAAAA
AAATAAATGAAATGTTTACAAAAAAAAAAAAAAAAA
back to top