CX290276

Overview
NameCX290276
Unique NameCX290276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290276 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 7.240e-11
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  343 GSVPLEVGNLKNLIELALSRNNFSNAIPITL*VLAQP*SI*VCRLIHSVEAFLSLNMLKKH*KGRSLMQQFRPDYFQNLPFLKYLNLSYSHFEGVVPRKV 642
            G +P+E+G++ NL +L LS NNFS +IP+TL                 +E  L LN+ + H  G+       P  F NL  ++ +++S++   GV+P ++
Sbjct:  420 GKIPVELGHIINLDKLDLSGNNFSGSIPLTL---------------GDLEHLLILNLSRNHLSGQ------LPAEFGNLRSIQMIDVSFNLLSGVIPTEL 498          

HSP 2 Score: 37.7354 bits (86), Expect = 7.240e-11
Identity = 17/55 (30.91%), Postives = 32/55 (58.18%), Query Frame = 2
Query:  134 ISDSFGNLTLLNHVPLGFSNLQGSAPSSLGNSK*LMKLNIRNNQIIGSLHKTSSA 298
            I    GN++ L+++ L  + L G+ P  LG  + L +LN+ NN+++G +    S+
Sbjct:  326 IPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISS 380          
The following BLAST results are available for this feature:
BLAST of CX290276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ERL1_ARATH7.240e-1131.00LRR receptor-like serine/threonine-protein kinase ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02022D11SK IF1 Citrus clementina cDNA clone C02022D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290276 ID=CX290276; Name=CX290276; organism=Citrus clementina; type=EST; length=749bp
CGCGAACTCTCATTGCTGCATAACAGAATCAGCTGACTCAGCATTGTTGA
CGTGGCATTGCTGACGCACCTTAGCTTCTGACTTCTTCTCTCTTCTCAGC
TCAGCACAATGAGCTTTCTTCACAAATGCGATCATCTCTGACTCTTTTGG
AAATTTAACATTACTCAATCACGTTCCTCTAGGATTCAGTAACTTGCAAG
GTAGTGCACCCTCATCCCTCGGCAATTCTAAGTAATTGATGAAATTAAAT
ATTAGGAATAATCAAATCATTGGTTCCTTGCACAAAACATCCTCAGCATA
ACAACCCTTTTTCTCCTAGATCTATCTGATAACCTACTTAATGGCTCTGT
TCCTCTAGAAGTGGGAAACTTGAAAAATCTTATTGAATTGGCTTTATCTA
GAAATAATTTTTCCAATGCGATTCCTATTACTCTTTAAGTTCTTGCACAG
CCTTAGAGTATCTAAGTATGCAGGTTAATTCATTCAGTGGAAGCATTCCT
CTCACTAAATATGTTGAAAAAGCATTAAAAAGGTAGATCTCTCATGCAAC
AATTTAGACCAGATTATTTTCAGAATCTACCCTTCTTAAAGTACTTAAAC
CTGTCTTATAGTCACTTCGAGGGTGTGGTGCCAAGAAAAGTACTGTTCAG
CAACAAAACAATAATTTAACTGGGAATGAAAAGCTTTGTGGCGTTTCAGG
TGAATTGCGTTTACCATATCTGGCTCATACCTCTTAAATGACATATCTG
back to top