CX290531

Overview
NameCX290531
Unique NameCX290531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:467..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.303e-111
Identity = 200/220 (90.91%), Postives = 216/220 (98.18%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++N+PEFAKKLASLADLYVNDAFG+AHRAHASTEGVAK+LKP+VAGFLMQKELDYLVGAV+NP+KPFAAIVGGSKVS+KIGVIESLLEKVD+LLLGGGMIFTFYKAQG++VGSSLVEEDKLDL TSLMEKAK+KGVSLLLPTDVVIADKFAADANSKVVPA+ IPDGWMGLD+GPDAIKSF  ALDTTKT+IWNGPMGVFEFDKFAAGTEAIAKKLAELS
Sbjct:  128 EKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVANPQKPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYAVGSSLVEEDKLDLATSLMEKAKAKGVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDIGPDAIKSFGSALDTTKTVIWNGPMGVFEFDKFAAGTEAIAKKLAELS 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 391.734 bits (1005), Expect = 1.825e-108
Identity = 195/220 (88.64%), Postives = 212/220 (96.36%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++NDPEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYLVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKLDL TSL+ KAK KGVSLLLPTDVVIADKFAADA+SK+VPA+ IPDGWMGLD+GPD+IK+FSEALDTT+T+IWNGPMGVFEF+KFAAGTEAIAKKL E+S
Sbjct:  155 EKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGMSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSIKTFSEALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEIS 374          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 2.383e-108
Identity = 193/220 (87.73%), Postives = 214/220 (97.27%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++N+PEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYLVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKL+L TSL+EKAK+KGVSLLLP+DVVIADKFA DANSK+VPA+AIPDGWMGLD+GPD++K+F++ALDTTKT+IWNGPMGVFEFDKFA GTEAIAKKLA+LS
Sbjct:  202 EKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLS 421          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 7.667e-107
Identity = 191/220 (86.82%), Postives = 212/220 (96.36%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++NDPEFAKKLAS+ADLYVNDAFG+AHRAHASTEGV KFL+PSVAGFLMQKELDYLVGAV+NPKKPFAAIVGGSKVS+KIGVIESLL KVDIL+LGGGMIFTFYKAQG +VG SLVEEDKL+L TSL+E AKSKGV LLLPTDVV+ADKFAADA SK+VPATAIPDGWMGLDVGPD+IK+F+EALDTTKT+IWNGPMGVFEF+KFAAGT+AIAK+LAEL+
Sbjct:  128 EKNDPEFAKKLASVADLYVNDAFGTAHRAHASTEGVTKFLRPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSSKIGVIESLLAKVDILILGGGMIFTFYKAQGLAVGKSLVEEDKLELATSLIETAKSKGVKLLLPTDVVVADKFAADAESKIVPATAIPDGWMGLDVGPDSIKTFAEALDTTKTVIWNGPMGVFEFEKFAAGTDAIAKQLAELT 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.446e-105
Identity = 189/220 (85.91%), Postives = 211/220 (95.91%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++NDPEFAKKLASLADL+VNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYL GAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKL+L TSL+ KAK+KGVSLLLP+DV+IADKFA DANS+ VPA+AIPDGWMGLD+GPD++K+F++ALDTT+TIIWNGPMGVFEFDKFA GTE+IAKKLAELS
Sbjct:  199 EKNDPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPSDVIIADKFAPDANSQTVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLAELS 418          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 379.793 bits (974), Expect = 7.176e-105
Identity = 188/220 (85.45%), Postives = 209/220 (95.00%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++N+P+FAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYLVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKL+L T L+ KAK+KGVSLLLPTDVV+ADKFA DANSK+VPA+ I DGWMGLD+GPD+IK+F+EALDTT+T+IWNGPMGVFE +KFAAGTEAIA KLAELS
Sbjct:  200 EKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNEALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELS 419          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.823e-90
Identity = 164/220 (74.55%), Postives = 188/220 (85.45%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++ND +FAK+LA LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G +VG SLVEEDKL+L   L  KAK+KGV LLLPTDV++AD FA DANS+V   TAIPDGWMGLD+GPDAIK F  AL   KT+IWNGPMGVFEFDKFAAGT AIA  LAELS
Sbjct:  128 EKNDADFAKQLAGLADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLAVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVLLADNFAPDANSQVADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELS 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.993e-90
Identity = 162/219 (73.97%), Postives = 188/219 (85.84%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAEL 673
            ++NDPEFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L++KEL YL  A+ NP++P AAI+GGSKVS+KIGVIE+LLEK D L++GGGMIFTFYKA+G +VG SLVEEDKL+L  SL  KAK +GVSLLLPTDVV+AD FA DANS+ V    IPDGWMGLD+GPD++K F EAL  TKT+IWNGPMGVFEFDKFAAGTEAIA  LAE+
Sbjct:  127 EKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQSAIENPQRPLAAIIGGSKVSSKIGVIETLLEKCDKLIIGGGMIFTFYKARGLNVGKSLVEEDKLELAKSLEAKAKERGVSLLLPTDVVLADNFAPDANSQTVSIDNIPDGWMGLDIGPDSVKVFQEALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEI 345          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.521e-90
Identity = 162/222 (72.97%), Postives = 188/222 (84.68%), Query Frame = 2
Query:    8 PRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAEL 673
            P  ++ND EFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L++KEL YL  A+ NP++P AAI+GGSKVS+KIGVIE+LLEK D L++GGGMIFTFYKA+G SVG SLVEEDKL+L  SL  KAK +GV+LLLPTDVV+AD FA DANS+ V    IPDGWMGLD+GPD++K F EAL  TKT+IWNGPMGVFEFDKFAAGTEAIA  LAE+
Sbjct:  124 PEEEKNDAEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQNAIENPQRPLAAIIGGSKVSSKIGVIETLLEKCDKLIIGGGMIFTFYKARGLSVGKSLVEEDKLELAKSLEAKAKERGVALLLPTDVVLADNFAPDANSQTVSIENIPDGWMGLDIGPDSVKFFQEALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEI 345          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.521e-90
Identity = 161/223 (72.20%), Postives = 192/223 (86.10%), Query Frame = 2
Query:    8 PRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            P  + N PEFA++LAS+ADLYVNDAFG+AHRAHASTEGV ++L+PSVAG+L++KEL YL  A+ NP++P AAIVGGSKVS+KIGVIE+LLEKVD LLLGGGMIFTFYKA+G +VG SLVEEDKL+L  +L  KAK +GV+LLLPTDVV+AD FAADAN++ V   +IPDGWMGLD+GPDA+K+F EAL   KT+IWNGPMGVFEFDKFA GTEAIA  LA L+
Sbjct:  130 PGEEANTPEFAQELASVADLYVNDAFGTAHRAHASTEGVTRYLRPSVAGYLIEKELQYLQSAIENPQRPLAAIVGGSKVSSKIGVIETLLEKVDKLLLGGGMIFTFYKARGLNVGKSLVEEDKLELARTLEAKAKERGVALLLPTDVVVADAFAADANAQTVSVESIPDGWMGLDIGPDAVKTFQEALSDCKTVIWNGPMGVFEFDKFAVGTEAIAHSLAGLT 352          
The following BLAST results are available for this feature:
BLAST of CX290531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC2.303e-11190.91Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_SPIOL1.825e-10888.64Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_TOBAC2.383e-10887.73Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKY_WHEAT7.667e-10786.82Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_WHEAT1.446e-10585.91Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_ARATH7.176e-10585.45Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGK_SYNS33.823e-9074.55Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_ANAVT4.993e-9073.97Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_NOSP76.521e-9072.97Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGK_CYAP46.521e-9072.20Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC02025B11SK IF1 Citrus clementina cDNA clone C02025B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290531 ID=CX290531; Name=CX290531; organism=Citrus clementina; type=EST; length=677bp
GATTCGGCCGAGGAGGAAGAGAAATGACCCAGAGTTTGCTAAGAAGCTAG
CTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGA
GCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGC
TGGTTTCCTTATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAA
ATCCCAAGAAACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACT
AAGATCGGTGTTATTGAATCACTTTTGGAGAAGGTTGACATTCTATTGCT
CGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGACACTCTGTTG
GTTCATCCCTTGTTGAGGAAGACAAGCTTGATCTCGGTACGTCACTTATG
GAGAAGGCCAAATCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGT
TATTGCTGACAAGTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAA
CGGCAATTCCAGATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATC
AAGTCATTCAGTGAAGCTTTGGATACTACTAAAACCATCATCTGGAATGG
ACCTATGGGTGTGTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAA
TTGCCAAGAAGCTTGCGGAGCTCAGCG
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