CX290532

Overview
NameCX290532
Unique NameCX290532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290532 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 124/237 (52.32%), Postives = 165/237 (69.62%), Query Frame = 1
Query:   16 RERRPPTWHSKYVTEINVAYCLLTEDGEPSTFHEALNSSDVSLWMTAMQEEIEALHKNKTWELVPLPHGRKANGNKWVYKIKRNGNN*VERYRARLAVKEYAQKEGIDFNEIFSPXXXXXXXXXXXAMCATFDLHLE*LDVKTAFLHGELEEEIYMLQPEGFAEIGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLEYNRLSSDHCAYKKKFEDNDFIILLLYVDDMLVVGPTK 726
            R  RP     +Y +     Y L+++D EP +  E L+  + +  M AMQEE+E+L KN T++LV LP G++    KWV+K+K++G+  + RY+ARL VK + QK+GIDF+EIFSP           ++ A+ DL +E LDVKTAFLHG+LEEEIYM QPEGF   GK+++VC+LNKSLYGLKQAPR WY +FDSF+ S  Y +  SD C Y K+F +N+FIILLLYVDDML+VG  K
Sbjct:  786 RSERPRVESRRYPS---TEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDK 1019          
BLAST of CX290532 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query:  100 PSTFHEALNSSDVSLWMTAMQEEIEALHKNKTWELVPLPHGRKANGNKWVYKIKRNGNN*VERYRARLAVKEYAQKEGIDFNEIFSPXXXXXXXXXXXAMCATFDLHLE*LDVKTAFLHGELEEEIYMLQPEGFAEIGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLEYNRLSSDHCAY-KKKFEDNDFIILLLYVDDMLV 711
            P++F E     D S W  A+  E+ A   N TW +   P  +    ++WV+ +K N      RY+ARL  + + QK  ID+ E F+P           ++   ++L +  +DVKTAFL+G L+EEIYM  P+G +    +N VC+LNK++YGLKQA RCW++ F+  +   E+   S D C Y   K   N+ I +LLYVDD+++
Sbjct:  891 PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS-CNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVI 1093          
BLAST of CX290532 vs. ExPASy Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.170e-15
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   52 VTEINVAYCLL---TEDGEPSTFHEALNSSDVSLWMTAMQEEIEALHKNKTWELVPLPHGRKANGNKWVYKIKRNGNN*VERYRARLAVKEYAQKEGIDFNEIFSP 360
            + ++N  Y L    T   EP +   AL       W  AMQEE++AL +NKTW LVP P  +   G KWV+K K + +  ++R +ARL  K + Q+EGI F E +SP
Sbjct:    9 INKLNPKYSLTITTTIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSP 111          

HSP 2 Score: 27.7202 bits (60), Expect = 5.170e-15
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  434 M*KLHFFMENLKKKYICSNQKVLQ 505
            M K+HF M   KKK+IC N  VL+
Sbjct:  137 MFKMHFSMGIFKKKFICINLLVLR 160          
BLAST of CX290532 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  430 LDVKTAFLHGELEEEIYMLQPEGFAEIGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLEYNRLSSDHCAYKKKFEDNDFIILLLYVDDMLVVGPT 723
            +DV TAFL+  ++E IY+ QP GF      + V  L   +YGLKQAP  W +  ++ +  + + R   +H  Y +   D   I + +YVDD+LV  P+
Sbjct:    1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGP-IYIAVYVDDLLVAAPS 97          
The following BLAST results are available for this feature:
BLAST of CX290532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
POLX_TOBAC7.104e-6452.32Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME3.802e-3337.07Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
M820_ARATH5.170e-1540.57Uncharacterized mitochondrial protein AtMg00820 OS... [more]
YCH4_YEAST4.090e-1135.71Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionC02025B12SK IF1 Citrus clementina cDNA clone C02025B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290532 ID=CX290532; Name=CX290532; organism=Citrus clementina; type=EST; length=733bp
AGTTAGTCGGTCACTCGTGAGAGACGACCGCCAACGTGGCACTCGAAGTA
TGTCACTGAGATCAATGTTGCGTACTGTCTTCTAACTGAGGATGGAGAGC
CATCAACTTTCCATGAAGCTTTAAACAGCTCAGATGTTTCTTTGTGGATG
ACAGCAATGCAGGAAGAAATTGAAGCTCTACACAAGAACAAGACATGGGA
ACTTGTACCACTACCACATGGAAGAAAAGCCAATGGAAACAAATGGGTTT
ACAAGATCAAACGTAATGGCAATAACTAAGTGGAGCGGTATCGTGCAAGA
TTGGCGGTGAAAGAATATGCTCAGAAAGAAGGTATTGACTTCAACGAGAT
ATTTTCTCCGGTGGTTCGACTTACAACAGTCAGAGTAGTCTTGGCGATGT
GTGCTACATTTGACTTACATCTTGAGTAGTTAGATGTGAAAACTGCATTT
CTTCATGGAGAACTTGAAGAAGAAATATATATGCTCCAACCAGAAGGTTT
TGCAGAAATAGGAAAGGAAAACTTGGTTTGCAGGTTGAACAAATCTCTAT
ACGGTCTCAAACAGGCGCCGAGGTGTTGGTATAAGAGATTTGATTCATTC
ATCATGAGCCTTGAATACAACAGACTCAGTTCAGACCATTGTGCATATAA
AAAAAAATTTGAAGATAATGATTTCATTATTTTGTTGTTATATGTGGATG
ACATGTTGGTAGTAGGCCCCACAAAGATCGAAT
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