CX290533

Overview
NameCX290533
Unique NameCX290533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_XENLA (RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.474e-100
Identity = 181/230 (78.70%), Postives = 209/230 (90.87%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+IY++L KE+V VGDVIYIEANSGAVKR GRSD +ATEFDLEAEEYVPLPKG+VH+KKE++QDVTLHDLD ANARPQGGQDILS+MGQ+MKP+KTEITDKLR +INKVVN++ID+G AELVPGVLFIDEVHMLD+ECF+YL+RALESSL+PIVIFATNRG C IRGT D+ SPHGIPLDLLDR++IIRT +Y P EM QI+ IRAQ E I + EE+L HL
Sbjct:  165 KGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRSDTYATEFDLEAEEYVPLPKGDVHQKKEVIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGQINKVVNKYIDQGIAELVPGVLFIDEVHMLDIECFTYLHRALESSLAPIVIFATNRGNCIIRGTEDVASPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_DANRE (RuvB-like 1 OS=Danio rerio GN=ruvbl1 PE=2 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.474e-100
Identity = 179/230 (77.83%), Postives = 210/230 (91.30%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+IY++L KE+V VGDVIYIEANSGAVKR GR D FATEFDLEAEEYVPLPKG+VH+KKEI+QDVTLHDLD ANARPQGGQDILS+MGQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLFIDEVHMLD+ECF+YL+RALESS++PIV+FA+NRG C IRGT D++SPHGIPLDLLDR++IIRT +Y P EM QI+ IRAQ E + + EE+L+HL
Sbjct:  165 KGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGAVKRQGRCDTFATEFDLEAEEYVPLPKGDVHEKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHRALESSIAPIVVFASNRGNCLIRGTEDISSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGLNISEEALSHL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_RAT (RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 2.736e-99
Identity = 178/230 (77.39%), Postives = 207/230 (90.00%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+I+++L KE+V  GDVIYIEANSGAVKR GR D +ATEFDLEAEEYVPLPKG+VHKKKEI+QDVTLHDLD ANARPQGGQDILS+MGQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLF+DEVHMLD+ECF+YL+RALESS++PIVIFA+NRG C IRGT D+ SPHGIPLDLLDR++IIRT +Y P EM QI+ IRAQ E I + EE+L HL
Sbjct:  165 KGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_MOUSE (RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 2.736e-99
Identity = 178/230 (77.39%), Postives = 207/230 (90.00%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+I+++L KE+V  GDVIYIEANSGAVKR GR D +ATEFDLEAEEYVPLPKG+VHKKKEI+QDVTLHDLD ANARPQGGQDILS+MGQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLF+DEVHMLD+ECF+YL+RALESS++PIVIFA+NRG C IRGT D+ SPHGIPLDLLDR++IIRT +Y P EM QI+ IRAQ E I + EE+L HL
Sbjct:  165 KGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_HUMAN (RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.573e-99
Identity = 178/230 (77.39%), Postives = 207/230 (90.00%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+I+++L KE+V  GDVIYIEANSGAVKR GR D +ATEFDLEAEEYVPLPKG+VHKKKEI+QDVTLHDLD ANARPQGGQDILS+MGQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLF+DEVHMLD+ECF+YL+RALESS++PIVIFA+NRG C IRGT D+ SPHGIPLDLLDR++IIRT +Y P EM QI+ IRAQ E I + EE+L HL
Sbjct:  165 KGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_SCHPO (RuvB-like helicase 1 OS=Schizosaccharomyces pombe GN=rvb1 PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 8.800e-98
Identity = 174/230 (75.65%), Postives = 209/230 (90.87%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+IY++L +E+V+ GDVIYIEAN+GAVKRVGRSDA+ATEFDLEAEEYVP+PKGEVHK+KEIVQDVTLHDLD ANARPQGGQDI+S+MGQ+MKP+KTEITDKLR EINKVVN++I++G AEL+PGVLFIDEVHMLD+ECF+YLN+ALES++SPIVIFA+NRGIC IRGT D+ +PHGIP DLLDRL+I+RT  Y  +E+  IL IRA+VE I+L +E L  L
Sbjct:  166 KGTKQLKLDPSIYESLQREQVSTGDVIYIEANTGAVKRVGRSDAYATEFDLEAEEYVPMPKGEVHKRKEIVQDVTLHDLDIANARPQGGQDIMSMMGQLMKPKKTEITDKLRGEINKVVNKYIEQGIAELIPGVLFIDEVHMLDIECFTYLNQALESTISPIVIFASNRGICTIRGTEDIQAPHGIPTDLLDRLLIVRTLPYSESEIRSILQIRAKVENIILTDECLDKL 395          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_DROME (RuvB-like helicase 1 OS=Drosophila melanogaster GN=pont PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.367e-97
Identity = 174/230 (75.65%), Postives = 204/230 (88.70%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRG-TDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+I+DAL KEKV VGDVIYIEANSGAVKR GRSD FATEFDLE EEYVPLPKG+VHKKKE++QDVTLHDLD ANARPQGGQD+LS+MGQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLFIDE+HMLD+E F+YL+++LES ++PIVIFATNRG C IRG TD+ SPHGIPLDLLDRL+IIRT +Y  A+M QI+ +RAQ E + L+E +   L
Sbjct:  165 KGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLFIDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_DROPS (RuvB-like helicase 1 OS=Drosophila pseudoobscura pseudoobscura GN=pont PE=3 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.831e-96
Identity = 172/230 (74.78%), Postives = 205/230 (89.13%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRG-TDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+I+DAL KEKV VGDVIYIEANSGAVKR GRSD FATEFDLE EEYVPLPKG+VHKKKE++QDVTLHDLD ANARPQGGQD+LS++GQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLFIDE+HMLD+E F+YL+++LES ++PIVIFATNRG C IRG TD+ SPHGIPLDLLDRL+IIRT +Y  ++M QI+ +RAQ E + L++ + A L
Sbjct:  165 KGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARPQGGQDVLSMVGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLFIDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLIIRTLLYSTSDMEQIIKLRAQTEGLQLEDPAFARL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_AEDAE (RuvB-like helicase 1 OS=Aedes aegypti GN=pont PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.076e-95
Identity = 171/230 (74.35%), Postives = 206/230 (89.57%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +GTKQLKLDP+IY++L KEKV VGDVIYIEANSGAVKR GRSD FATEFDLE EEYVPLPKG+VHKKKE+VQDVTLHDLD ANARPQGGQD+LS++GQ+MKP+KTEITDKLR EINKVVN++ID+G AELVPGVLFIDEVHMLD+ECF+YL+++LES+++PIVIFATNRG C IRGT D+ SPHGIPLDLLDRL+I+RT  Y  +E+ QI+ +RAQ E + +++ ++  L
Sbjct:  165 KGTKQLKLDPSIYESLQKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVVQDVTLHDLDVANARPQGGQDVLSMVGQIMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLECFTYLHKSLESAIAPIVIFATNRGRCVIRGTDDIISPHGIPLDLLDRLLIVRTAPYNLSEIEQIIKLRAQTEGLSVEDSAIQAL 394          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_EMENI (RuvB-like helicase 1 OS=Emericella nidulans GN=rvb1 PE=3 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 3.239e-92
Identity = 168/227 (74.01%), Postives = 201/227 (88.55%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +GTK+L+LDP+IY+A+ KE+V VGDVIYIEAN+GA KRVGRSDA+ATEFDLEAEEYVP+PKGEVHKKKEIVQDVTLHDLD ANARPQGGQD++S+MGQ+MKP+KTEITDKLRQEINKVVNR+ID+G AELVPGVLFIDEVHMLD+ECF+YLNRALESS+SPIVI A+NRG   IRGT D+++ HGIP DLL RL+II T  Y P E+  I+ +RA+ E + + + +L
Sbjct:  166 KGTKKLRLDPSIYEAIQKERVTVGDVIYIEANTGACKRVGRSDAYATEFDLEAEEYVPVPKGEVHKKKEIVQDVTLHDLDIANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEVHMLDIECFTYLNRALESSISPIVILASNRGHTVIRGTDDISAAHGIPPDLLARLLIIPTHPYSPDEIKTIIRLRAKTEGLNITDPAL 392          
The following BLAST results are available for this feature:
BLAST of CX290533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB1_XENLA2.474e-10078.70RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1[more]
RUVB1_DANRE2.474e-10077.83RuvB-like 1 OS=Danio rerio GN=ruvbl1 PE=2 SV=1[more]
RUVB1_RAT2.736e-9977.39RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV... [more]
RUVB1_MOUSE2.736e-9977.39RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1[more]
RUVB1_HUMAN3.573e-9977.39RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1[more]
RUVB1_SCHPO8.800e-9875.65RuvB-like helicase 1 OS=Schizosaccharomyces pombe ... [more]
RUVB1_DROME4.367e-9775.65RuvB-like helicase 1 OS=Drosophila melanogaster GN... [more]
RUVB1_DROPS2.831e-9674.78RuvB-like helicase 1 OS=Drosophila pseudoobscura p... [more]
RUVB1_AEDAE1.076e-9574.35RuvB-like helicase 1 OS=Aedes aegypti GN=pont PE=3... [more]
RUVB1_EMENI3.239e-9274.01RuvB-like helicase 1 OS=Emericella nidulans GN=rvb... [more]

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Properties
Property NameValue
Genbank descriptionC02025C01SK IF1 Citrus clementina cDNA clone C02025C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290533 ID=CX290533; Name=CX290533; organism=Citrus clementina; type=EST; length=688bp
ACGAGGGACCAAGCAACTGAAGCTGGACCCTACTATTTATGATGCCTTGA
TCAAGGAGAAAGTAGCTGTTGGAGATGTTATATATATTGAAGCAAATAGC
GGAGCAGTCAAAAGGGTGGGAAGAAGTGATGCATTTGCTACTGAGTTTGA
CCTGGAAGCCGAAGAATATGTTCCACTACCTAAAGGGGAAGTTCACAAAA
AGAAAGAGATAGTTCAGGATGTAACACTACATGATCTAGATGCTGCAAAT
GCAAGGCCTCAAGGTGGGCAAGATATATTGTCCTTGATGGGTCAAATGAT
GAAGCCCAGAAAAACAGAAATTACTGACAAGTTACGACAAGAAATAAATA
AGGTTGTTAATCGGTTCATAGACGAGGGGGCGGCAGAGCTTGTTCCTGGA
GTTTTATTCATTGATGAGGTACATATGCTGGATATGGAGTGCTTTTCCTA
TCTGAATCGTGCTTTAGAAAGCTCACTATCTCCTATTGTAATCTTTGCTA
CAAATAGAGGAATATGTAACATAAGAGGGACGGATATGAATAGTCCTCAT
GGCATACCTCTGGACTTGTTGGACCGCTTGGTGATTATCCGGACACAAAT
TTATGGTCCTGCTGAGATGATTCAGATTTTGGCAATTCGGGCACAGGTTG
AGGAAATTGTTTTAGATGAAGAGAGTCTGGCCCACCTG
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