CX290538

Overview
NameCX290538
Unique NameCX290538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig300 contig Ccv1_Contig300:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_BOVIN (Protein disulfide-isomerase A3 OS=Bos taurus GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.651e-34
Identity = 84/189 (44.44%), Postives = 114/189 (60.32%), Query Frame = 3
Query:   42 TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            TGE P V   T   +  K ++  E + D   ++ F ED+ +G +K + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y +L + LR   +IVIAKMD T N+     +  GFPTI F PA NK  +P   +  R +     +LK+ A+ P  IQ+    PK +K   E
Sbjct:  320 TGEIPVVAVRTAKGE--KFVMQEEFSRDGKALERFLEDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLRKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKQNPKKYEGGRELSDFISYLKREATNPPVIQE--EKPKKKKKAQE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_CHICK (Protein disulfide-isomerase A3 OS=Gallus gallus GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.677e-34
Identity = 86/202 (42.57%), Postives = 116/202 (57.43%), Query Frame = 3
Query:   12 GKPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            G  +SE FG+    GEAP V   T   D  K ++  E + D   ++ F +D+ +G +K + KS+P+PE NDG VK+VV  NFDEIV  E KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PAG K   P   +  R V     +LK+ A+    +Q+   A K++K   E
Sbjct:  306 GHELSE-FGLDNSVGEAPVVAIRTAKGD--KFVMQEEFSRDGKALERFLQDYFDGNLKKYLKSEPVPENNDGPVKVVVAENFDEIVNAEDKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFAPAGKKQ-SPKKYEGGREVSDFISYLKREATSTPVLQEEDKAKKSKKKAKE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 79/183 (43.17%), Postives = 111/183 (60.66%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNAS 539
            ED    V +  G++     V A   ++  KK  ++ E    D ++ F   F +GK+KP  KS P+P+ N G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP YN LAK  +G   +VIAKMD T N+    R K +GFPTI F P+G+K  +P+  +  DR +  L KF++++A+
Sbjct:  456 EDYAGEVKD-LGLSESGEDVNAAILDESGKKFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKK-NPVKFEGGDRDLEHLSKFIEEHAT 636          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_PONAB (Protein disulfide-isomerase A3 OS=Pongo abelii GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.183e-32
Identity = 80/188 (42.55%), Postives = 112/188 (59.57%), Query Frame = 3
Query:   45 GEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            GE P V   T   +  K ++  E + D   ++ F +D+ +G +K + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PA NK  +P   +  R +     +L++ A+ P  IQ+    PK +K   E
Sbjct:  321 GEIPVVAIRTAKGE--KFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREATNPPVIQE--EKPKKKKKAQE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_HUMAN (Protein disulfide-isomerase A3 OS=Homo sapiens GN=PDIA3 PE=1 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 1.183e-32
Identity = 80/188 (42.55%), Postives = 112/188 (59.57%), Query Frame = 3
Query:   45 GEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            GE P V   T   +  K ++  E + D   ++ F +D+ +G +K + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PA NK  +P   +  R +     +L++ A+ P  IQ+    PK +K   E
Sbjct:  321 GEIPVVAIRTAKGE--KFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREATNPPVIQE--EKPKKKKKAQE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_CERAE (Protein disulfide-isomerase A3 OS=Cercopithecus aethiops GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.183e-32
Identity = 80/188 (42.55%), Postives = 112/188 (59.57%), Query Frame = 3
Query:   45 GEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            GE P V   T   +  K ++  E + D   ++ F +D+ +G +K + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PA NK  +P   +  R +     +L++ A+ P  IQ+    PK +K   E
Sbjct:  321 GEIPVVAIRTAKGE--KFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREATNPPVIQE--EKPKKKKKAQE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_CHICK (Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.871e-32
Identity = 75/172 (43.60%), Postives = 106/172 (61.63%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  + + LT DKIK F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YAPWCGHC+   P ++KL +  R  ++IVIAKMD T NE    K   FPT+ FFPAG+   + I+ + +RT+    KFL+
Sbjct:  306 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDDLTADKIKEFCNKFLEGKIKPHLMSQDLPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYAPWCGHCKQLAPIWDKLGETYRDHENIVIAKMDSTANEVEAVKIHSFPTLKFFPAGS-GRNVIDYNGERTLEGFKKFLE 476          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA4_RAT (Protein disulfide-isomerase A4 OS=Rattus norvegicus GN=Pdia4 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.667e-32
Identity = 76/183 (41.53%), Postives = 109/183 (59.56%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNAS 539
            ED    V +  G++     V A   ++  KK  ++ E    D ++ F   F +GK+KP  KS P+P+ N G V++VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G   +VIAKMD T N+  + R K +GFPTI F P+G+K  +PI  +  +R +  L KF+ ++A+
Sbjct:  454 EDYATEVKD-LGLSESGEDVNAAILDESGKKFAMEPEEFDSDALQEFVMAFKKGKLKPVIKSQPVPKNNKGPVRVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGQKDLVIAKMDATANDITNDRYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHAT 634          

HSP 2 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 3
Query:   57 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD--GFPTILFFPAG 458
            ++LA    +DA +   D E  ++      ED  +         D +    +  V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  L+  D  I +AK+D T+     +K D  G+PTI     G
Sbjct:   17 QLLAAASAEDAHEDASDSENPIEDDDDEEEDEED--------EDDLEVKEENGVWVLNDENFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG 144          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA4_MOUSE (Protein disulfide-isomerase A4 OS=Mus musculus GN=Pdia4 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.667e-32
Identity = 76/183 (41.53%), Postives = 109/183 (59.56%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNAS 539
            ED    V +  G++     V A   ++  KK  ++ E    D ++ F   F +GK+KP  KS P+P+ N G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G   +VIAKMD T N+  + + K +GFPTI F P+G+K  +PI  +  +R +  L KF+ ++A+
Sbjct:  449 EDYATEVKD-LGLSESGEDVNAAILDESGKKFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHAT 629          

HSP 2 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   57 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD--GFPTILFFPAG 458
            ++LA     DA++   D E   ++ +   +D LE K     + + +   NDG        NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  L+  D  I +AK+D T+     +K D  G+PTI     G
Sbjct:   17 QLLAAASAGDAQEDTSDTENATEEEEEEDDDDLEVK-----EENGVWVLNDG--------NFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG 139          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA4_BOVIN (Protein disulfide-isomerase A4 OS=Bos taurus GN=PDIA4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.667e-32
Identity = 67/141 (47.52%), Postives = 91/141 (64.54%), Query Frame = 3
Query:  123 DKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 539
            D ++ F   F +GK+KP  KS P+P+ N G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G  ++VIAKMD T N+    R K +GFPTI F P+G+K       D +R +  L KF++++A+
Sbjct:  494 DALRDFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGHKNLVIAKMDATANDVTSDRYKVEGFPTIYFAPSGDKKKPIKFEDGNRDLEHLSKFIEEHAT 634          
The following BLAST results are available for this feature:
BLAST of CX290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PDIA3_BOVIN1.651e-3444.44Protein disulfide-isomerase A3 OS=Bos taurus GN=PD... [more]
PDIA3_CHICK3.677e-3442.57Protein disulfide-isomerase A3 OS=Gallus gallus GN... [more]
PDIA4_HUMAN4.803e-3443.17Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
PDIA3_PONAB1.183e-3242.55Protein disulfide-isomerase A3 OS=Pongo abelii GN=... [more]
PDIA3_HUMAN1.183e-3242.55Protein disulfide-isomerase A3 OS=Homo sapiens GN=... [more]
PDIA3_CERAE1.183e-3242.55Protein disulfide-isomerase A3 OS=Cercopithecus ae... [more]
PDIA1_CHICK5.871e-3243.60Protein disulfide-isomerase OS=Gallus gallus GN=P4... [more]
PDIA4_RAT7.667e-3241.53Protein disulfide-isomerase A4 OS=Rattus norvegicu... [more]
PDIA4_MOUSE7.667e-3241.53Protein disulfide-isomerase A4 OS=Mus musculus GN=... [more]
PDIA4_BOVIN7.667e-3247.52Protein disulfide-isomerase A4 OS=Bos taurus GN=PD... [more]

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Properties
Property NameValue
Genbank descriptionC02025C08SK IF1 Citrus clementina cDNA clone C02025C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290538 ID=CX290538; Name=CX290538; organism=Citrus clementina; type=EST; length=661bp
ATGAAGATGTCGGAAAGCCTGTTTCAGAGTATTTTGGCATCACTGGGGAA
GCTCCCAAAGTTCTTGCATACACGGGGAATGATGACGCTAAAAAACATAT
CCTGGATGGAGAGTTGACCTTGGATAAAATTAAGACTTTTGGAGAGGATT
TCCTCGAAGGCAAGGTTAAGCCTTTCTTTAAGTCTGATCCAATTCCAGAA
ACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAACTTTGATGAAAT
TGTCTTGGATGAGTCAAAGGATGTTCTTCTGGAGATCTATGCCCCTTGGT
GTGGGCATTGCCAAGCCTTCGAGCCAACCTACAACAAACTGGCCAAACAT
CTACGTGGCGTTGATTCTATTGTTATCGCTAAGATGGATGGCACGACAAA
TGAACATCACAGGGCAAAGTCTGATGGATTCCCAACAATTCTTTTCTTCC
CAGCTGGAAACAAGAGTTTTGATCCTATCAATGTAGATGTTGACCGTACT
GTGGTGGCATTGTACAAGTTTCTTAAGAAAAATGCTTCAATCCCCTTTAA
AATCCAGAAGCCAACATCAGCACCCAAGACGGAGAAACCAACTTCAGAAC
CAAAAGCTGAGTCCTCAGATATCAAAGAGAGCCACGAGAGCAGTAGCGAC
AAAGATGTGAA
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