CX290543

Overview
NameCX290543
Unique NameCX290543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig302 contig Ccv1_Contig302:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.204e-87
Identity = 148/209 (70.81%), Postives = 168/209 (80.38%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXXSDP 655
            TQPHGLKLLIEDYPYA DGLL+WSAI+ WVRTYV  YYPN + I  D ELQSWY+ESIN GHADLR   WWP L   DDLVSILTT+IWLASAQHAALNFGQYPYGGYVPNRPPLMRRL+PDE+DPEY SF++ P KY+  ++PS+ Q +K+MAVVDTLSTHSPDEEY+GERQQP IW+GD EI EAF+ F+A             +DP
Sbjct:  676 TQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADP 884          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 2.879e-87
Identity = 145/194 (74.74%), Postives = 167/194 (86.08%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSA 607
            PTQPHGLKLL+EDYPYA DGLL+WSAI+ WVRTYV  YY NS+ I  D ELQ+WY+ESIN GHAD R   WWP L   +DLVS++TTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRL+PDE+DPE+TSF+ +P KYF  ++PS+LQ TK+MAVVDTLSTHSPDEEY+GERQQP IW+GD EI +AF+ FSA
Sbjct:  682 PTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSA 875          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.443e-71
Identity = 125/210 (59.52%), Postives = 148/210 (70.48%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXXSDP 655
            P+QPHGL+LLIEDYPYAADGLL+WSAI  W   YV+ YYP+   +  D ELQSWYAE++ +GHAD R   WWP L    DL S+LTT++WL SAQHAALNFGQYP GGY+PNRPPLMRRLVP E DPEY   +A+PH++FL ALPS+ Q T +M V+DTLSTHS DEEYLGER     W+ D     A  EF+A             +DP
Sbjct:  656 PSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDE-AWTADPAALAAAREFAADVRRAEEEIERRNADP 864          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 5.454e-70
Identity = 129/197 (65.48%), Postives = 152/197 (77.16%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPD-END-PEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGE-RQQPWI-WSGDGEITEAFFEFSA 607
            TQPHG++LLIEDYPYA DGLL+WSAI  WV +YV  YYP++  +  D ELQ WY ESI+ GH DLRH  WWP L    DL SILTT++WLASAQHAALNFGQYP GGYVPNRPPL+RRL+PD E D  EY +FLA+PH++FL A+P VL+ATK+MAVVDTLSTHSPDEEYLGE R +  + W+ D     A   F+A
Sbjct:  671 TQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHESIHVGHGDLRHAPWWPPLSTPVDLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAA 867          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.657e-59
Identity = 108/189 (57.14%), Postives = 136/189 (71.96%), Query Frame = 2
Query:   41 GLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGE-RQQPWIWSGDGEITEAFFEFS 604
            G++L+I+DYPYAADGLLIW AI+D V +YV H+Y +S  I  D ELQ+W+ E  N GH D + E WWP L    DL  ILT +IW+AS QHAA+NFGQYP+GGYVPNRP L+R+L+P E DP+Y  F+  P   FL +LP+ LQATK MAV +TLSTHSPDEEYL E R+    W  D ++ + F +FS
Sbjct:  677 GVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFS 865          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52
Identity = 95/210 (45.24%), Postives = 128/210 (60.95%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXXSDP 655
            P+ PHGL+L+IEDYPYA DGL IW AI+ WV  YVS YYP  + +  D ELQ+W+ E++  GH DL+ + WWP +   +DL+   + I+W ASA HAA+NFGQYPYGG + NRP L RR +P E  PEY   +  P K +L  +    +    ++V++ LS H+ DE YLGER+ P  W+ D +  EAF  F +             SDP
Sbjct:  621 PSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETP-NWTTDKKALEAFKRFGSKLTGIEGKINARNSDP 829          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.007e-52
Identity = 94/192 (48.96%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ PHGL+LLIEDYPYA DGL IW+AI+ WV+ YVS YY     +  D ELQ W+ E++  GH DL+ + WWP L   ++LV I T IIW ASA HAA+NFGQYPYGG++ NRP   RRL+P++  PEY   +    K +L  + S  Q    ++V++ LS H+ DE YLG+R  P  W+ D +  +AF +F
Sbjct:  623 PSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKEAVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVKSHQKAYLRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPH-WTSDSKALQAFQKF 813          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.927e-52
Identity = 93/192 (48.44%), Postives = 127/192 (66.15%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ PHG++LLIEDYPYAADGL IW+AI+ WV+ YV  YY     + +D ELQ W+ E++  GH DL+ + WWP L   +DLV +   IIW+ASA HAA+NFGQYPYGG + NRP   RRL+P++  PEY   +    K +L  + S L     ++V++ LSTH+ DE YLG+R  P  W+ D +  +AF +F
Sbjct:  595 PSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKF 785          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.698e-52
Identity = 96/193 (49.74%), Postives = 120/193 (62.18%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVP--DENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            T  HG++L I DYP+A DGL++W AI++WV  YV HYYP+   I  D+ELQ W++E  N GH D + E WWP L   DDL+ ++TTI W+ S  HAA+NFGQY YGGY PNRP   R  +P  D  D     F   P K  L   PS  QAT  M  +D LSTHSPDEEY+GE+Q+   W+ +  I  AF  F
Sbjct:  652 TAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEA-SWANEPVINAAFERF 843          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 98/187 (52.41%), Postives = 122/187 (65.24%), Query Frame = 2
Query:   44 LKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDP-EYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            L+L IEDYPYA DGLL+W AI+ W   YV+HYYP +  I DD+ELQ W+ E    GH D + E WWP L   + LV +L TI+W+ SA HAA+NFGQYP  GYVPN P + RR +P E  P E  +F A P K +L  LPS LQ    MA +D LS+H+ DEEY+G  Q+P  W  DGE+ +AF  F
Sbjct:  689 LELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCEMGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEP-AWQRDGEVDKAFQVF 874          
The following BLAST results are available for this feature:
BLAST of CX290543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LOX3_ARATH2.204e-8770.81Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH2.879e-8774.74Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ6.443e-7159.52Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ5.454e-7065.48Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH5.657e-5957.14Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOXX_SOYBN1.763e-5245.24Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX2_SOYBN3.007e-5248.96Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_SOYBN3.927e-5248.44Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX2_ARATH6.698e-5249.74Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU1.492e-5152.41Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionC02025D01SK IF1 Citrus clementina cDNA clone C02025D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290543 ID=CX290543; Name=CX290543; organism=Citrus clementina; type=EST; length=657bp
ATTCGGCCGAGGATGGCAGTCCTGACCCACACAGCCACATGGTTTGAAGT
TGCTAATTGAGGACTACCCATACGCAGCAGACGGACTTCTAATTTGGTCA
GCAATTGAGGATTGGGTGCGCACTTATGTGAGCCATTACTACCCAAATTC
AAGCCAAATTTGTGACGACAAAGAGCTACAATCATGGTACGCTGAGTCCA
TCAACACAGGCCATGCCGATCTTCGCCACGAAAGCTGGTGGCCCACATTA
ATCAACGGTGATGATCTGGTGTCCATCCTAACTACGATCATCTGGCTCGC
ATCTGCACAGCACGCTGCACTCAATTTTGGACAGTACCCGTATGGTGGTT
ACGTGCCCAATCGCCCTCCCCTAATGAGAAGATTAGTACCCGACGAAAAT
GACCCCGAGTATACCAGTTTCTTAGCTGAACCACACAAGTATTTCCTGCT
GGCATTGCCAAGCGTACTACAAGCGACCAAATACATGGCCGTGGTAGACA
CATTGTCTACACATTCGCCGGACGAGGAGTACCTCGGGGAACGACAACAG
CCGTGGATTTGGTCCGGCGATGGTGAGATAACCGAGGCATTTTTTGAATT
TTCTGCGGAGAATAGACGGATAGAAAAAGAAATCGAGAAAAGAAACAGTG
ATCCAAG
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