CX290544

Overview
NameCX290544
Unique NameCX290544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290544 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 72/164 (43.90%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    7 SFKGKQPSDDRVELSKCVVNYAGGLPLAIEVLGSFLCGRSVEEWKSSLNRLQEAPNEKVLKVLRISYDGLDKRDKEIFLDIACFFKGKDKDRVRKKLDSCVFNSVIGIRELLDKSLITIVN-NKLWMHDLLQEMGWEIVREHHSDKPGKWSRLWLYKDVYHVLS 495
            +F  + P+++  +LS  VVNYA GLPLA++V GS L    + EWKS++  ++      ++  L+ISYDGL+ + +E+FLDIACF +G++KD + + L+SC   +  G+R L+DKSL+ I   N++ MHDL+Q+MG  IV  +    PG+ SRLWL K+V  V+S
Sbjct:  361 AFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIV--NFQKDPGERSRLWLAKEVEEVMS 522          
BLAST of CX290544 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.794e-24
Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    7 SFKGKQPSDDRVELSKCVVNYAGGLPLAIEVLGSFLCGRSVEEWKSSLNRLQEAPNEKVLKVLRISYDGLDKRDKEIFLDIACFFKGKDKDRVRKKLDSCVFNSV-IGIRELLDKSLI-TIVNNKLWMHDLLQEMGWEIVREHHSDKPGKWSRLWLYKDVYHVLS 495
            +FK   PSDD   L+      AG LPLA+ VLGSF+ G+  EEW+ SL  L+   + +V KVL++ YDGL   +K++FL IAC F G+ ++ +++ + +     V  G++ L DKSLI    N ++ MH LL+++G E+VR+    +PGK   L   K+   VLS
Sbjct:  357 AFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLS 521          
BLAST of CX290544 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 59/143 (41.26%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   43 ELSKCVVNYAGGLPLAIEVLGSFLCGRS-VEEWKSSLNRLQEAPNEKVLKVLRISYDGLDKRDKEIFLDIACFFKGKDKDRVRKKLDSCVFNSVIGIRELLDKSLITIVNNKLWMHDLLQEMGWEIV-REHHSDKPGKWSRLW 465
            E+S  V+ YA G PLA+ + G  L G+    E + +  +L+E P    +  ++ SYD L+ R+K IFLDIACFF+G++ D V + L+ C F   +GI  L++KSL+TI  N++ MH+L+Q++G +I+ RE    K  + SRLW
Sbjct:  321 EVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQIINRETRQTK--RRSRLW 461          
BLAST of CX290544 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.549e-21
Identity = 55/139 (39.57%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    7 SFKGKQPSDDRVELSKCVVNYAGGLPLAIEVLGSFLCGRS-VEEWKSSLNRLQEAPNEKVLKVLRISYDGLDKRDKEIFLDIACFFKGKDKDRVRKKLDSCVFNSVIGIRELLDKSLITIVNNKLWMHDLLQEMGWEIV 420
            S K      +  ELS  V+NYA G PLAI V G  L G+  + E +++  +L+  P  K++   + +YD L   +K IFLDIACFF+G++ + V + L+ C F   + I  L+DK L+TI  N++W+H L Q++G EI+
Sbjct:  316 SIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTISENRVWLHKLTQDIGREII 454          
BLAST of CX290544 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   46 LSKCVVNYAGGLPLAIEVLGSFLCGRSVEEWKSSLNRLQEAPNEKVLKVLRISYDGLDKRDKEIFLDIACFFKGKDKDRVRKKLDSCVFNSVIGIRELLDKSLITI-VNNKLWMHDLLQEMGWEIVREHHSDKPGKWSRLWLYKDVYHV 489
            LS  +V ++ G P  ++ L S        EW      ++      +  +   S  GLD  ++ IFLDIACFF   DKD V   LD C F++ +G R L+DKSL+TI  +N + M   +Q  G EIVR+  +D+PG  SRLW    + HV
Sbjct: 1000 LSLELVKFSNGNPQVLQFLSSI-----DREWNKLSQEVKTTSPIYIPGIFEKSCCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIRHV 1143          
The following BLAST results are available for this feature:
BLAST of CX290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TMVRN_NICGU6.334e-3143.90TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
Y4117_ARATH9.794e-2440.00Putative disease resistance protein At4g11170 OS=A... [more]
WRK16_ARATH1.197e-2141.26Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRK52_ARATH4.549e-2139.57Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRK19_ARATH1.049e-1737.58Probable WRKY transcription factor 19 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC02025D02SK IF1 Citrus clementina cDNA clone C02025D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290544 ID=CX290544; Name=CX290544; organism=Citrus clementina; type=EST; length=647bp
TTTGAAAGTTTCAAAGGCAAACAACCCTCCGATGACCGTGTTGAGCTCTC
GAAATGTGTAGTCAATTATGCAGGAGGGCTTCCATTAGCAATTGAAGTTT
TGGGATCCTTTTTGTGTGGTCGAAGTGTTGAGGAATGGAAAAGTTCTTTG
AATAGGCTACAAGAAGCTCCTAATGAAAAAGTTTTGAAAGTTCTCAGAAT
AAGTTATGATGGACTTGATAAAAGAGATAAAGAAATATTCTTAGATATTG
CATGTTTCTTCAAGGGGAAGGACAAAGATCGAGTCAGGAAAAAACTAGAC
AGTTGCGTTTTTAACTCAGTTATTGGGATAAGAGAACTCCTAGACAAATC
CTTGATAACTATTGTAAATAACAAACTGTGGATGCATGATTTGCTACAGG
AAATGGGTTGGGAAATTGTTCGAGAGCACCATAGTGACAAGCCCGGCAAA
TGGAGTAGATTATGGCTTTATAAGGATGTGTATCATGTTTTATCAAAATA
TATGGTAAGATATTTGTCAGGGAACATAATTCCATACATTACTGTCTTAC
TAAAAGTGAAAACTACAGTTTGATAATTCATTTTCACCTTTTAATTTTAC
TTCTGTTTCCTTTATTTATTAGGGAACAGATGCAGTTGAAGCTATAA
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