CX290546

Overview
NameCX290546
Unique NameCX290546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15064 contig Ccv1_Contig15064:808..1468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290546 vs. ExPASy Swiss-Prot
Match: PSL1_HUMAN (Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   10 VLAIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHE--SVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 303
            +L  + +P  K  T+LL   F+YDIF+VF++  L     S+M+ VA G  D +  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  336 MLKTIRLPTFKACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 442          
BLAST of CX290546 vs. ExPASy Swiss-Prot
Match: PSL1_CHICK (Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   10 VLAIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 303
            +L  + +P  K  T+LL   F+YD+F+VF++  L    ES+M+ VA G  D +  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  332 MLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGESIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 438          
BLAST of CX290546 vs. ExPASy Swiss-Prot
Match: PSL1_RAT (Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   10 VLAIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHE--SVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 303
            +L  + +P  K  T+LL   F+YDIF+VF++  L     S+M+ VA G  + S  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  329 MLRTIRLPTFKACTLLLLVLFVYDIFFVFITPYLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 435          
BLAST of CX290546 vs. ExPASy Swiss-Prot
Match: PSL1_MOUSE (Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   10 VLAIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHE--SVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 303
            +L  + +P  K  T+LL   F+YDIF+VF++  L     S+M+ VA G  + S  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  329 MLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 435          
The following BLAST results are available for this feature:
BLAST of CX290546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSL1_HUMAN3.993e-1239.25Signal peptide peptidase-like 2B OS=Homo sapiens G... [more]
PSL1_CHICK3.993e-1239.25Signal peptide peptidase-like 2B OS=Gallus gallus ... [more]
PSL1_RAT6.812e-1239.25Signal peptide peptidase-like 2B OS=Rattus norvegi... [more]
PSL1_MOUSE8.897e-1239.25Signal peptide peptidase-like 2B OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionC02025D04SK IF1 Citrus clementina cDNA clone C02025D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290546 ID=CX290546; Name=CX290546; organism=Citrus clementina; type=EST; length=661bp
CGAGGTACAGTCCTGGCAATTGTCCATATTCCTAATCTCAAGGTGGGTAC
AGTTCTTCTCAGCTGTGCCTTCATGTACGACATCTTTTGGGTATTTGTTT
CCAAGAAGTTGTTTCATGAAAGTGTGATGATTGTGGTGGCACGTGGCGAT
AAAAGTGGTGAGGATGGTATCCCAATGCTATTGAAGATTCCTCGCATGTT
TGACCCATGGGGCGGTTACAGCATCATCGGTTTTGGTGATATTCTTTTAC
CTGGATTGATTATAGCATTTTCACTCAGGTTCAAGCTCTCTGACCTTTCC
TCACACCACATCCCTATTAGTGCTTTGTACTCGCAAGCTTTTACTTCCTA
AATACTTTGGTGAATGCCTCTGGTATTATTGCAAATATTTTTCATCCCAC
TGGATATATGCTTTCCAGCGAGTGAATTCTTAACTTAATCAATAAGTTGC
GCATGAAAAAACCTATAGTAGCTTGTGCTTGGCTCATCATCACAGGTACG
ACTGGCTAGCAAATAAGAGTCTTCAGGCTGGATACTTTTTGTGGGCAATG
TTGGCTTATGGATTAGGTCTTCTCATCACATATGTGGCACTGAACTTGAT
GGATGGCCACGGCCAACCTGCTCTGCTTTATATTGTCCCATTCACGTTAG
GGACTTTTCTG
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