CX290547

Overview
NameCX290547
Unique NameCX290547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4005 contig Ccv1_Contig4005:785..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.150e-112
Identity = 198/217 (91.24%), Postives = 210/217 (96.77%), Query Frame = 3
Query:    3 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEI 653
            YVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+
Sbjct:  246 YVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEV 462          
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 399.053 bits (1024), Expect = 1.076e-110
Identity = 196/217 (90.32%), Postives = 206/217 (94.93%), Query Frame = 3
Query:    3 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEI 653
            YVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEI
Sbjct:  256 YVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEI 472          
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.190e-109
Identity = 192/217 (88.48%), Postives = 208/217 (95.85%), Query Frame = 3
Query:    3 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEI 653
            YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEI
Sbjct:  262 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEI 478          
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.454e-107
Identity = 190/217 (87.56%), Postives = 204/217 (94.01%), Query Frame = 3
Query:    3 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEI 653
            YVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVY ALMMAQIE+
Sbjct:  244 YVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEV 460          
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_YEAST (Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae GN=ILV5 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 60/184 (32.61%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   27 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 578
            G GINSS+AV  DV G+A   A   +VA+GS + + TT E+E  SD++GERG L+G +HG+  + +    ENG +   A+  TVE  T  +  +I   GM  +Y++ S   ++     Y         +  + YE    G+E +  +    +   +E L    +  I    +WKVG+ VR  RP
Sbjct:  210 GRGINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETKRSLEFNSQPDYREKLEK-ELDTIRNMEIWKVGKEVRKLRP 392          
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_SCHPO (Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv5 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 63/189 (33.33%), Postives = 100/189 (52.91%), Query Frame = 3
Query:   27 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG-----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 578
            G GINSSFAV+QDV G+A   A+G +VA+GS F + TT ++E  SD+ GERG L+G ++G+  + ++   E G +   A+  TVE  T  +  +I   G+  ++ + S   ++              ++L E Y++V  G+E +  +        R  Y+KE      + +I    +WK GE VRS RP
Sbjct:  217 GRGINSSFAVYQDVTGKAQEKAIGLAVAVGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLEYNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399          
BLAST of CX290547 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 59/187 (31.55%), Postives = 98/187 (52.41%), Query Frame = 3
Query:   27 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 578
            G GINSSFAV+QDV G+A   A+   VA+GS + + TT E+E  SD++GERG L+G +HG+  + +    E G +   A+  TVE  T  +  +I   GM  ++++ S   ++   ++   +  +  P   +    Y+ V  G E +  +    +   +E   A  + +I    +W+ G+ VRS RP
Sbjct:  216 GRGINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKFKDALKP---VFNNLYDSVKNGDETKRSLEYNSQPDYRERYEA-ELDEIRNLEIWRAGKAVRSLRP 398          
The following BLAST results are available for this feature:
BLAST of CX290547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ILV5_PEA1.150e-11291.24Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH1.076e-11090.32Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL1.190e-10988.48Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_ORYSJ1.454e-10787.56Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_YEAST6.697e-2032.61Ketol-acid reductoisomerase, mitochondrial OS=Sacc... [more]
ILV5_SCHPO6.697e-2033.33Probable ketol-acid reductoisomerase, mitochondria... [more]
ILV5_NEUCR4.341e-1931.55Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionC02025D05SK IF1 Citrus clementina cDNA clone C02025D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290547 ID=CX290547; Name=CX290547; organism=Citrus clementina; type=EST; length=654bp
TCTATGTTCAAGGCAAAGAGATTAATGGTGCTGGAATTAATTCCAGTTTT
GCTGTCCACCAGGATGTTGATGGAAGAGCTACCAATGTCGCCCTAGGATG
GTCAGTTGCCCTTGGTTCTCCTTTCACATTTGCCACCACATTAGAGCAGG
AGTACAGGAGTGACATCTTTGGGGAGCGTGGCATTCTACTTGGTGCTGTT
CATGGAATTGTGGAATCCTTGTTTAGAAGGTTCACTGAAAATGGAATGAA
TGAGGATCTGGCTTACAAGAATACCGTGGAGTGCATAACAGGAATTATAT
CAAAGATCATCTCAACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCT
GGAGAAGACAAAAAGGAATTCGAGAAAGCTTATAGTGCCTCATATTATCC
GTGCATGGAAATCTTATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTG
AGATCCGCAGTGTTGTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGT
CTACCAGCTTTCCCTATGGGAAAAATTGATCAGACTCGCATGTGGAAAGT
TGGTGAGCGAGTCCGATCAACACGTCCAGCAGGTGACTTAGGCCCATTAC
ACCCATTCACAGCAGGTGTTTATGCGGCTCTGATGATGGCCCAGATTGAG
ATCC
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