CX290548

Overview
NameCX290548
Unique NameCX290548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13169 contig Ccv1_Contig13169:289..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 62/195 (31.79%), Postives = 114/195 (58.46%), Query Frame = 3
Query:   36 IQNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKR---SLNRPEMLALGALAGFTASTISFP 611
            + +++G F  +++ +GW GL+ GN +N+LR+ P++AIE  T++  K+ +T        +E PK+ I    ++ +L+  +            STL  +P+E++K R+T+  DVY +++ A  KI ++ G    Y G++P+LIG++PY+ C ++ YETLK+ Y  +  +R    +     L +G+ AG  AS+ +FP
Sbjct:  169 VDSMAGVFQWIMQNEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKFLTP-----KGDEPPKIPIPTPLVAGALAGFA------------STLCTYPMELIKTRVTIEKDVYDNVAHAFVKILRDEGPSELYRGLTPSLIGVVPYAACNFYAYETLKRLYRRATGRRPGADVGPVATLLIGSAAGAIASSATFP 346          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 58/193 (30.05%), Postives = 95/193 (49.22%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL--GALAGFTASTISFP 611
            NI G F +++++ G + LW GNG N+++I P  A++   +E  K+ +T        EE  K+      +S S++  +            +    +P+EV+K RL V     Y  +     KI K  G+GAFY G  P L+G++PY+     +YE LK  + ++  K S+N   M+ L  GAL+       S+P
Sbjct:  233 NIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLT--------EEGQKIGTFERFISGSMAGAT------------AQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYP 405          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 58/193 (30.05%), Postives = 96/193 (49.74%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEM--LALGALAGFTASTISFP 611
            NI G F +++++ G + LW GNG N+++I P  A++   +E  K+ +T   +K    E  +   G ++ + + ++I                  +P+EVLK RL V+    Y  +     KI K  G GAFY G  P L+G++PY+     +YE LK  + ++  K S+N   M  L+ GAL+       S+P
Sbjct:  231 NIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFE--RFISGSMAGATAQTFI------------------YPMEVLKTRLAVAKTGQYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYP 403          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 58/193 (30.05%), Postives = 96/193 (49.74%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL--GALAGFTASTISFP 611
            NI G F +++++ G + LW GNG N+++I P  A++   +E  K+ +T   +K    E  +   G ++ + + ++I                  +P+EVLK RL V     Y  +     KI K  G+GAFY G  P L+G++PY+     +YE LK  + ++  K S+N   M+ L  GAL+       S+P
Sbjct:  233 NIYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFE--RFVSGSMAGATAQTFI------------------YPMEVLKTRLAVGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYP 405          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 60/194 (30.93%), Postives = 95/194 (48.97%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFP 611
            NI G F ++I++ G + LW GNG N+++I P  A++   +E  K+ +T        EE  K+      +S S++  +            +    +P+EV+K RL V     Y  +     KI K  G GAFY G  P L+G++PY+     +YE LK  + ++  K S+N P +L L   GAL+       S+P
Sbjct:  231 NIFGGFRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLT--------EEGQKIGTFERFISGSMAGAT------------AQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVN-PGVLVLLGCGALSSTCGQLASYP 403          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   45 ISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFP 611
            I+G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK RL +     Y  ++     I+K+ G+ AFY G  P ++G++PY+     +YETLK  +       S +     +LA G ++       S+P
Sbjct:  226 IAGGFTQMIREGGLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSNQETLGILE--RLVSGSLAGAIAQSSI------------------YPMEVLKTRLALGRTGQYSGIADCAKHIFKKEGMTAFYKGYIPNMLGIIPYAGIDLAVYETLKNSWLQRFATDSADPGVFVLLACGTMSSTCGQLASYP 397          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFP 611
            NI G    +I++ G   LW GNGIN+L+I P  AI+   +E +KRA+   QE    +E  +   G L+ + + + I                  +P+EVLK RLT+     Y  L     +I +  G  AFY G  P ++G++PY+     +YETLK ++    +  S N P +L L   G ++       S+P
Sbjct:  223 NILGGLRNMIQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQE--RFVAGSLAGATAQTII------------------YPMEVLKTRLTLRRTGQYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQYSHESAN-PGILVLLGCGTISSTCGQIASYP 395          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 56/192 (29.17%), Postives = 90/192 (46.88%), Query Frame = 3
Query:   45 ISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFP 611
            I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     KI    G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+P
Sbjct:  226 IVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYP 397          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 55/192 (28.65%), Postives = 91/192 (47.40%), Query Frame = 3
Query:   45 ISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFP 611
            I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     +I  + G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+P
Sbjct:  226 IIGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYP 397          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 3
Query:   45 ISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFP 611
            I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     +I    G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+P
Sbjct:  226 IVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYP 397          
The following BLAST results are available for this feature:
BLAST of CX290548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BT1_MAIZE7.186e-2631.79Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
SCMC1_HUMAN3.952e-1630.05Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE5.162e-1630.05Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN5.162e-1630.05Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT1.150e-1530.93Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE3.346e-1529.69Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC3_MOUSE5.707e-1530.93Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_BOVIN4.831e-1429.17Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_RAT6.310e-1428.65Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN6.310e-1428.65Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC02025D06SK IF1 Citrus clementina cDNA clone C02025D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290548 ID=CX290548; Name=CX290548; organism=Citrus clementina; type=EST; length=611bp
GATTCGGCCGAGGCGAGAATGGTGGTTGGTGTTGGATCCAAAATATTTCT
GGTAGTTTCATTGAAGTAATTGAGCAGCAGGGTTGGCAAGGACTATGGGC
TGGCAATGGAATTAATATGCTCCGAATAATCCCCACCCAGGCAATTGAGC
TTGGAACATTTGAGTGTGTCAAACGAGCTATGACTACGGCACAAGAGAAA
TGGAGTCAGGAGGAATGCCCAAAAGTGCAAATTGGTCCTCTCAGTTTGAG
TTTTTCTCTCTCCTGGATTTCTCCTGTTGCCGTGGCTGGTGCAGCTGCTG
GAGTTGTTAGCACGCTTGCGTGCCATCCTCTTGAAGTATTGAAGGATCGG
TTGACTGTAAGTCATGATGTGTACCCTAGTTTGAGCATTGCAATTAGCAA
AATATATAAGGAGGGTGGAATTGGTGCTTTTTATGCCGGTATTTCACCTA
CGTTGATTGGCATGCTCCCGTATAGTACTTGTTACTACTTTATGTATGAG
ACATTGAAAAAGAAATACTGCAATTCAAAGAATAAGAGGTCGCTAAACCG
TCCGGAGATGCTTGCATTGGGAGCTCTTGCAGGTTTTACAGCTAGCACCA
TCAGCTTTCCC
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